F20509

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20509

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20509

Determination of introduced cDNA(s)

  • RAFL09-92-M23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-92-M23 - Resource: pda09038

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-92-M23 - full reading 
    GCAACTCTCT CATTTTCTTA AAATCTCTTT CTCACAGAAC CAAAAACCAA 
    AATCTCAGTC TCAAACAAAC AACAACAACA CACGAGTCAC GAGGTTGAAG 
    AAGAAGAAGA AGAAGCAAAT ATGTTAAACG GCTGGAGAAG AGCTTTTTGC 
    ACTTCCATTC CCAAAGAAAC TAACCAAAAC GACGTCGACG ACGACGGACT 
    CGTTGGTCTC CGCCACAAAT CAACCTCTCG ATTCGGCTTT TTCTCAACTC 
    CTTCTACGCC TCGTTCTGAT TCCGGCACCG GAACTTACAG CCTCCGTTGC 
    AGGACTTCAA CAGCCACCGC CGTCTCCACT ACTTCATCTC TTCCCGGAAC 
    TCCAAAGCTT AAGTGCAAAA CCACCACCAC CGGAGAAACA ACTCCCAGAA 
    ACAGAAGCCT TGTCTCTCTT TTAACACCTT CTTCTTCTTC TATTTCTCCG 
    GCGAGCTTCA CTCTCCTCAA ATCCAAACTC CGATTCAAGC AGAGTAGCAG 
    TAACAAATGT GGAATCTGTT TACAGAGTGT GAAATCAGGT CAAGGTACGG 
    CGATTTTCAC GGCGGAGTGT TCTCACACGT TTCATTTTCC TTGCGTAACC 
    TCACGCGCCG CCGCGAATCA TAACCGTCTT GCTTCTTGTC CGGTTTGCGG 
    ATCCTCGCTT TTGCCTGAGA TTCGAAATTA CGCTAAACCG GAATCTCAAA 
    TCAAACCGGA AATTAAAAAC AAGTCGTTGA GAGTTTACAA CGATGACGAA 
    GCTTTGATTT CATCTCCGAT ATCTCCCGCC GGATTTCACA CAATACTTGA 
    ATCAGATGAG AACGAAGACT GCGAGGAGTT TACAGGATTT TCCGTTAATA 
    CTCCGTCACC TTTAACGGCG AAATTGTTAA CGGATCGAAA CGTGGACGTT 
    AAGCTCTCTC CGGAATCGGC TATCGTTGCG TCGGGTAAAG GCTACGAGAC 
    TTACTCCGTC GTCATGAAGG TGAAATCGCC ACCGTTTCCG ACGGCGCGTG 
    GATTTGCGCG TAGAGTGCCG GTGGATTTGG TTGCTGTTTT AGACGTAAGC 
    GGGAGAAATT CCGGTGGGAA ATTGGAGATG TTGAAACAAA CGATGAGGAT 
    TGTGCTTTCG AATCTCCGGG AGATGGATCG TTTATCGATT ATTGCGTTTT 
    CGTCCAGCTC GAAACGGTTA TCGCCGTTAC GGAGGATGAC GGCGAACGGG 
    AGGAGATCGG CGCGAAGAAT CGTAGATATC ATCACCGTTC CTGGTTCTGT 
    CTCCGGCGTC GGAATTGATT TCTCCGGTGA AGGGATGAGT GTGAACGACG 
    CGTTGAAGAA AGCGGTTAAG GTGTTAGACG ATCGCCGGCA GAAAAACCCT 
    TTCACCGCCG TGTTCGTTTT AACGGACCGT CAAGCCCATC AAGTGGCCCA 
    ATTAGCCCAT TCGAGAATCC CTATACACAC CATATGGCTT AGCCACGCGA 
    TTCCCGAAGA CGCGTTTGCG AGGACCATCA ACGGTTATTT GAGTTTGTCG 
    GTTCAGGATC TCGGTTTACA GCTCGGGATA GTTTCCGGGT TGGGTCAAGG 
    AGAGATAACT TCTGTTTACT CTCTTTCCGG TCGACCCGCT TGGCTTGGAA 
    CCGGTTCAAT CCGGTTAGGT GATATGTATG CGGAGGAAGA AAGAGCGTTG 
    CTGGTTGAAA TCAAATCACC GGTTAACAAT TCCTTAACCG GTAGTAGATC 
    TCACAAAATC ATGACCGTTA GATCTCGTTA CGTGGATCCA ACAACTCAGG 
    AATTAAGAAA CCCCGAAGAT CGCGCGCTTT TAATACCTAC TCCTCTAACT 
    GTCCGATCAT CATCAAATCC CAACATCTCA CGGCTCAGAA ACCTCCACGT 
    CAGCACTCGA GCCGTCGCGG AGTCTCGGCG GCTAATAGAG CGTAACCATT 
    ACTCCGGAGC TCATAGATTG CTGACGTCAG CTAGAGCATT GCTTGTGCAG 
    CACGGTTTGA GCTCGAGCGA TGCGTGTATA CGTGGACTGG ACGCAGAGAT 
    AGCTGATCTT AATAGTGTGA AAGGAAGACA CGTGGCGGCA TCAGAGAGTT 
    TGGAGTCGCT TACTCCGACG TCGGCTTGGA AAGCGGCGGA GAGGTTGGCT 
    AAAGTGGCGA TGGTGAGGAA ACATATGAAC AGAGTCAGTG ACTTGCATGG 
    TTTCGAAAAC GCTAGATTTT AGCTTTTTTA TGTATTTAAA TATATTTCCA 
    TATTTAGAGT AACAACTTGT GTAATAATAA TCTGATACAA ACAAATAGAA 
    ATGGTGCATA AATGGAGTTA TATTTGGCCA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT2G22680.1 [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam von Willebrand factor, type A 1.6e-10
    HMMPfam Zinc finger, C3HC4 RING-type 8.6e-05
    Gene3D no description 2.2e-05
    ProfileScan Zinc finger, RING-type 11.427
    ProfileScan von Willebrand factor, type A 10.552
    superfamily vWA-like 4e-15
    superfamily RING/U-box 1.1e-10
    HMMSmart Zinc finger, RING-type 5.7e-07
    HMMSmart von Willebrand factor, type A 6.2e-09

    See the detailed result >

    AT2G22680.1

    Model type
    Protein coding
    Short Description
    Zinc finger (C3HC4-type RING finger) family protein
    Computational Description
    Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 1023 Blast hits to 1022 proteins in 225 species: Archae - 2; Bacteria - 267; Metazoa - 133; Fungi - 122; Plants - 361; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR