F20517

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20517

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20517

Determination of introduced cDNA(s)

  • RAFL09-43-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-H09 - Resource: pda13183

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-43-H09 - full reading 
    AGAGCGTTCA GATTTCTCTT CAACATAATC ATGGCATTGA CCTTCTTCTT 
    CTTGTTATCG AATTTGTTCT TCTCCGGTAA GAATCTGCCT GATCTCACAT 
    ATTTAAAGAC TCTAATTATT TTTAAATTTC TTCATTTTTT TCAATCTTAG 
    GAGTTATGTC AAGGAGCTTC ACATTTTCAA ACAAATGCGA TTACACAGTG 
    TGGCCGGGAA TTCTATCTAA CGCCGGAGTT TCTCCATTAC CAACCACCGG 
    CTTCGTCCTC CTGAAAGGCG AGACGCGTAC AATCAACGCA CCGTCATCAT 
    GGGGGGGTCG TTTCTGGGGA AGAACACTCT GCTCAACCGA TTCCGATGGA 
    AAATTCTCGT GTGCCACCGG AGATTGCGGC TCCGGAAAAA TCGAATGCTC 
    CGGCGCTGGA GCTGCTCCTC CTGCGACTTT AGCTGAATTC ACTCTCGATG 
    GCTCCGGAGG ACTCGATTTC TACGATGTCA GTCTCGTCGA CGGCTACAAT 
    GTCCAGATGC TGGTGGTTCC TCAAGGCGGC TCCGGTCAGA ATTGCAGCAG 
    CACCGGCTGC GTCGTCGATT TAAACGGATC TTGCCCGTCG GAGCTAAGGG 
    TGAATAGCGT CGACGGGAAG GAGGCGGTGG CGATGGCGTG TAAAAGTGCG 
    TGCGAGGCGT TTCGGCAGCC GGAGTATTGC TGCAGCGGCG CGTTTGGATC 
    GCCTGACACG TGTAAGCCGT CTACGTACTC GCGGATCTTC AAGAGCGCGT 
    GTCCACGCGC CTATAGCTAC GCGTATGACG ATAAGTCTAG TACATTTACG 
    TGCGCGAAAT CTCCCAACTA CGTCATCACT TTCTGTCCTT CTCCCAACAC 
    CAGCCTAAAA TCAGCTGAGG AACACAGCAC AGAGACAATG ACGACGACAA 
    GTCCAAGTTC CGGCAGTACG ACGTCGTCGC AGATGGTCTA CGAAGGTGCT 
    CTGGACGAAA GCAGTGGTTC ACCATCTACG TATCACGGCG TATCACGAGC 
    AATCACAGTC GTTCTTCTCT CGCTTGCTTT TTGTCGTATG TGGTGGTTCT 
    TCTGACCAGA GATTATTTGT CTTAGTGTCT GCCACGTATG CGCAGAAACA 
    AGAACGTATG GGCCTTTAGA AGGCCTTTTC TCACTATAGT AAAAATATTT 
    CTAAAGTTTT TCCACATAAT GTCAACTTTT TACTCCACAT GACCAAACGT 
    TGAATGATTA AACCATTCTT AAGGAAAATC AAGAAAGTAG GCTATATTAA 
    AGCATTAATA TTGGTAGTAT TTTAGATTAG TCTTAAGTCT AAACATAGTT 
    TTTAGGAATA ATTTTATAAT TAATTTTAAA AATTTTGATG TTAAAAAACT 
    AAAATTTTGG CAATATACAA TGGTGGTTTT

    Gene models with high sequence identity

    1. AT1G20030.1 [+] show detail - Pathogenesis-related thaumatin superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Thaumatin, conserved site 0
    ProfileScan Thaumatin, pathogenesis-related 45.601
    FPrintScan Thaumatin, pathogenesis-related 5.8e-14
    FPrintScan Thaumatin, pathogenesis-related 5.8e-14
    FPrintScan Thaumatin, pathogenesis-related 5.8e-14
    FPrintScan Thaumatin, pathogenesis-related 5.8e-14
    superfamily Thaumatin, pathogenesis-related 2.7e-127
    HMMPfam Thaumatin, pathogenesis-related 1.7e-91
    HMMSmart Thaumatin, pathogenesis-related 5.4e-122
    Gene3D Thaumatin, pathogenesis-related 4.4e-77

    See the detailed result >

    AT1G20030.1

    Model type
    Protein coding
    Short Description
    Pathogenesis-related thaumatin superfamily protein
    Computational Description
    Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 1614 Blast hits to 1596 proteins in 182 species: Archae - 0; Bacteria - 45; Metazoa - 56; Fungi - 77; Plants - 1416; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR