F20518

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20518

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20518

Determination of introduced cDNA(s)

  • RAFL09-09-K20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-09-K20 - Resource: pda05286

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-09-K20 - full reading 
    AGAGTTAGAG AGAGAGAGAC CACGCCAGAT ATACCTTTCT TGTTTCACCG 
    GTTTTCATAC ACAAAAATGG CGGGCAGTGC CTCATTCGCC GCCGCATTAT 
    TCATCGGACT CTCTCTTCTC TTCGCCGTCA CGGCTGAAGA TCCGTACAGA 
    TTCTTTGAAT GGAACATAAC TTACGGCGAT ATATACCCAC TCGGTGTTCG 
    CCAACAGGGT ATTTTGATCA ACGGGGCGTT TCCGGGACCG GACATTCATT 
    CGGTTACTAA TGACAATCTC ATCATCAACG TCTACAATAG CCTCGACGAA 
    CCTTTCCTTC TTTCATGGAA TGGAATTCAA CAGAGGAGGA ACTCTTTCGT 
    TGATGGAGTG TATGGAACGA CATGCCCAAT CCCGCCGGGG AAGAACTACA 
    CTTACATTCT TCAGATGAAG GATCAGATCG GAAGTTTTTA CTACTTCCCT 
    TCTCTCGGCT TTCACAAAGC CGCCGGTGGA TTTGGTGGCA TTCGTATCCT 
    CAGTCGTCCT AGAATCCCGG TCCCTTTCCC TGATCCCGCC GGAGATACCA 
    CTGTCCTTAT CGGAGACTGG TACAAAGCAA ACCACACGGA TTTGAGAGCA 
    CAGCTTGATA ATGGTAAGAA GCTTCCTTTA CCAGACGGCA TCCTCATCAA 
    TGGTCGTTCA AGTGGTGCAA CTCTTAATGT TGAACAAGGT AAGACATACA 
    GGTTTAGAAT ATCCAATGTA GGGTTACAAG ACTCTCTCAA CTTCCGCTTT 
    CAAGACCATA AGATGAAAGT GGTGGAAGTC GAAGGAACAC ACACTCTTCA 
    GACTACTTTC TCTTCACTAG ATGTTCATGT TGGACAATCT TACTCAGTCC 
    TTGTAACCGC GGACCAGACT CCACGGGATT ATTACGTGGT CGTCTCTTCT 
    CGGTTTACCT CAAATGTCCT TACTACCACG GGTATTTTCC GATACAGTAA 
    TTCTGCTGGT GGTGTTTCTG GACCTATTCC TGGTGGACCT ACCATTCAAA 
    TCGACTGGTC CTTGAACCAG GCTCGAGCCA TCAGGACTAA CCTTTCAGCG 
    AGCGGACCAA GGCCAAATCC ACAAGGATCG TACCACTACG GTATGATAAA 
    CACTACAAGA ACGATCAGAC TTGCTAGCTC TGCTGGTCAG GTTGATGGGA 
    AGCAACGATA CGCTGTGAAC AGTGTCTCAT TCAAACCCGC AGACACTCCT 
    CTGAAAATCG CGGACTACTT CAAGATTGAC GGTGTTTACA GAAGTGGAAG 
    CATACAGTAC CAACCCACTG GTGGAGGAAT ATACCTCGAC ACATCTGTTA 
    TGCAAGTTGA TTACAGAACC TTTGTGGAGA TTATTTTCGA AAATTCTGAG 
    GATATTGTCC AGAGCTGGCA TCTTGATGGT TACTCTTTCT GGGTTGTTGG 
    AATGGATGGT GGACAGTGGA GTCCAGATAG TAGGAACGAG TATAACCTAC 
    GCGATGCAGT CGCTCGCTGC ACCGTTCAGG TATACCCAAG CTCATGGACG 
    GCTATATTGA TAGCACTCGA CAACGTAGGA ATGTGGAATC TAAGATCCGA 
    GTTCTGGGCG AGGCAATACT TAGGACAACA ATTGTATTTA CGTGTGTACA 
    CACCCTCAAC TTCTCTCAGA GATGAATATC CAATCCCCAA GAACGCTCTT 
    CTCTGCGGGA GAGCCAGTGG TCGCAGCACC AGACCGCTTT GAGCTGGTGG 
    TTAGATATAG AAATGACGGA GAGATGGTCA GCCAAACCAG CTGACGCGTT 
    CTTGAGGCGG GTTTCTTGTT TTATACACAT TCTTCATTTT GCTAATGAAT 
    GAGAAGAGTT TATGTTAAAA TCAGTATATC AGTTTGTAAC GATCTCAGCT 
    CGAGGTCTCA TTCTTGATTC TTATATTCTT TCTTTTTCTA TGGAACGAAA 
    CATTTATTCA ATATAATTCC ACAGTTTCAT CGTG

    Gene models with high sequence identity

    1. AT1G76160.1 [+] show detail - SKU5 similar 5
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PECTINESTERASE 0
    HMMPanther MULTI-COPPER OXIDASE 0
    superfamily Cupredoxin 6.8e-47
    superfamily Cupredoxin 1.7e-40
    superfamily Cupredoxin 5.8e-38
    HMMPfam Multicopper oxidase, type 1 6.2e-43
    HMMPfam Multicopper oxidase, type 3 1.4e-32
    HMMPfam Multicopper oxidase, type 2 1.6e-28
    Gene3D Cupredoxin 5.6e-34
    Gene3D Cupredoxin 1.4e-47
    Gene3D Cupredoxin 6.2e-57

    See the detailed result >

    AT1G76160.1

    Model type
    Protein coding
    Short Description
    SKU5 similar 5
    Computational Description
    SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR