F20526

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20526

Determination of introduced cDNA(s)

  • RAFL05-16-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-O12 - Resource: pda02702

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-O12 - full reading
    AGCAAACCGA AGTGGGAACG AAACCCCATG CTCCAAGTCC AATTAAATAA 
    CATATGTCCA CAGAAATGTT TTCAAAATTC GAATAAGCCA CAGCAACGTG
    TCTTGTTCAT ATATCCACTA TAACCCAAAG CTGCTTCAAT GGTCGGATAT
    GGACACGTGT CAGTTAATCA GACCATCTCC AAGAAAAAAT ATCCCAAATC
    TTTCTTCCCT ATTCAGTCCC CCAATCAACA ATCCTCTTCA CATTTCTATT
    TTCTCCTCCG AGGTCGTCTC TCGACCAAAC CACAAAAACC AGAACAAAAA
    TAACTAAAAA ACAATCAGAT CTGAGATCGA ACAAAACAAC ATGAACACGT
    TAATCCCATC GGAGAAAAGA TGGATCATCA CCGGCGTTTT ACTAGCCGGT
    TTAGTTGGCG GTGCTTTGCT TTTCACAAGC TTCATACGAG CCGCTGACGA
    AACGCTCTTC CTCTGTTCCA CAGCAAGCGC CAAAAGCAGA GCGGTGGCTG
    CGGCAGCTGA TTACGAAGCG ACTCCGATTC AGCTTCAAGC GATCGTCCAC
    TACGCGACAT CTAACGTTGT CCCACAACAG AATCTTGCTG AGATCTCGAT
    CTCTTTCAAC ATCTTGAAAA AGCTAGCTCC GGCTAACTTT CTCGTGTTCG
    GTCTCGGTCG TGACTCGCTC ATGTGGGCTT CTTTAAATCC ACGTGGCAAA
    ACCTTGTTCT TGGAAGAAGA TCTTGAATGG TTTCAGAAAG TGACCAAAGA
    CTCTCCTTTC TTACGTGCGC ATCACGTGCG TTACAGGACG CAGCTTCAAC
    AAGCCGATTC GCTTCTACGT TCGTACAAAA CGGAGCCTAA GTGTTTTCCG
    GCGAAATCTT ATCTCCGGGG AAACGAGAAG TGTAAGCTAG CTCTCACGGG
    ACTGCCCGAT GAGTTCTACG ATACAGAGTG GGATCTGCTG ATGGTCGATG
    CTCCTAAAGG TTACTTCGCA GAAGCTCCGG GAAGAATGGC GGCGATTTTC
    TCGGCGGCTG TTATGGCTAG GAACCGGAAG AAACCGGGAG TTACGCACGT
    GTTCTTGCAC GATGTTAATC GGAGGGTGGA GAAGACTTTT GCCGAGGAGT
    TTTTATGCCG GAAGTATAGA GTCAACGCCG CCGGGAGGTT ATGGCATTTT
    GCTATTCCTC CGGCGGCTGC GAACGCTACG ATTGACTCTG GTGATTATAG
    GTTTTGCTAA GATTGCGACA CGATTTATCT TCTTATTTCC TCTTTTGCCC
    TTTTATTTTA CTTTTTTGAG GAATTTTATT ACAGCATTGG GTTCACTT

    Gene models with high sequence identity

    1. AT1G27930.1 [+] show detail - Protein of unknown function (DUF579)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Conserved hypothetical protein CHP01627 1.8e-84
    HMMPfam Protein of unknown function DUF579 1.2e-75

    See the detailed result >

    AT1G27930.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF579)
    Curator Summary
    Function unknown. Interacts with eIF3.
    Computational Description
    FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G67330.1); Has 251 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR