F20532

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20532

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20532

Determination of introduced cDNA(s)

  • RAFL05-18-J06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-J06 - Resource: pda02762

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-J06 - full reading 
    TTTGTTTTGA TTTCCTCTCT CACTCTGCAC ACGAAGGCGA GAGAGAGAGA 
    GAAAGAAAAA AGCGAAGAAT ACGCAGAATC CATCCAATTT AGGGTTAGGG 
    CTGCCCCTAA TCTGGAAACC TTTGCCTCGT TTCTGATCTG TTTTCCGGAT 
    CCGACTTGAA GGAAAGAAGA CGACGACGCA CTACCAAAAA CATGGGCGCG 
    AATTCGCTTC CAACGGATGC AACCCTCGAT CTAGATGAGC AGATCTCGCA 
    GCTCATGCAG TGCAAGCCTC TCTCCGAGCA ACAGGTCAGA GCATTATGTG 
    AGAAAGCTAA GGAGATCTTA ATGGATGAAA GCAACGTTCA GCCTGTTAAA 
    AGCCCTGTGA CAATCTGCGG TGATATTCAT GGACAGTTCC ATGATCTTGC 
    AGAGCTTTTC CGTATTGGGG GAAAGTGTCC TGATACCAAC TATCTGTTTA 
    TGGGAGACTA TGTCGACCGT GGATATTATT CTGTGGAAAC TGTTACGCTG 
    TTGGTTGGCT TGAAAGTACG GTATCCACAG CGAATCACTA TTCTTAGAGG 
    AAACCATGAA AGTCGTCAGA TTACTCAGGT TTATGGATTT TATGATGAAT 
    GTCTGCGAAA GTATGGCAAT GCAAATGTTT GGAAGATATT TACAGACCTC 
    TTTGACTATT TCCCACTGAC AGCCTTGGTG GAGTCGGAAA TATTCTGCCT 
    TCACGGTGGA TTATCACCAT CCATCGAGAC CCTTGACAAC ATTAGGAACT 
    TTGATCGGGT TCAAGAAGTT CCACATGAAG GGCCTATGTG TGACTTATTA 
    TGGTCTGATC CTGATGACAG ATGTGGCTGG GGAATCTCTC CTCGTGGTGC 
    TGGATATACA TTTGGTCAGG ATATTTCGGA ACAATTCAAT CACACTAACA 
    ACTTAAAGCT GATCGCCCGA GCGCATCAGC TCGTTATGGA TGGATTCAAT 
    TGGGCACACG AGCAAAAAGT GGTTACTATA TTCAGTGCAC CAAACTATTG 
    CTATCGCTGT GGAAACATGG CCTCAATTCT TGAGGTCGAT GACTGCAGGA 
    ACCACACGTT CATTCAGTTT GAACCAGCAC CGAGGAGAGG AGAGCCAGAT 
    GTAACCCGAA GGACACCTGA CTATTTCCTT TGAAGATACT CAGCTCCTCC 
    TGCAGCTTCC GGTTGTTGGT TTTTGAAGAT CTCTGCTTAT TCCATTTGGT 
    TCAACGCATT TGTGTTCCAG GTTGCTTCTC TTTAAAATCA ATTTAGCCCT 
    CTCCCTTGGA ATAGTGTAAT ATAGGCAAAG AGGTCAATGA ACTTTAAAAC 
    CTCTCATGAA CATGTGTTTG GCTGAACTTA TTAGCTCCCT TCTGCATCAG 
    AATCTGTTTA TTGTGAGATA TTTTTTCGAT TTATTTCACG TAATTTTTCC 
    TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT3G58500.1 [+] show detail - protein phosphatase 2A-4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2e-90
    Gene3D no description 4.8e-126
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 2.2e-165
    superfamily Metallo-dependent phosphatases 3e-127
    HMMPfam Metallophosphoesterase 6.5e-42
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 1.5e-264
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.5e-264

    See the detailed result >

    AT3G58500.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A-4
    Curator Summary
    Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
    Computational Description
    protein phosphatase 2A-4 (PP2A-4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-3 (TAIR:AT2G42500.1); Has 6816 Blast hits to 6628 proteins in 481 species: Archae - 80; Bacteria - 203; Metazoa - 2402; Fungi - 1409; Plants - 984; Viruses - 3; Other Eukaryotes - 1735 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR