F20548

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20548

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • variegated (PATO:0000335)
    (Rosette leaf::Color::variegated)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20548

Determination of introduced cDNA(s)

  • RAFL06-78-L19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-78-L19 - Resource: pda03745

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-78-L19 - full reading 
    AAATCTAAAA CCCTAAATTC TCAATTGCTC GTCACACTTC GTCACTCCAC 
    CAGCGACAAT CGCCGCAGAA ACCTCTACGA AACTTGCTAC AATGGAGTTT 
    TCATCACAAG ACGACGATTT TGGAGGAGAC GATTCCGCTG CTAATGCCAC 
    CAGGGCTTCA GGTAATAGAA GAAGCTTCGG TGATCTTGAA GACGATGAAG 
    ATGATATTTT CGGATCAACA ACGGTAGCGC CTGGTGTTAG AACTGGGATG 
    ATTTTGTCTC TCCGAGGAAG TCTTAAGAAT TGTAAAGATG ATCTTGCTTC 
    ATGTCAAAAT GAGCTCGAGT CAGCAAAAAC AGAGATTCAG AAGTGGAAGT 
    CAGCGTTTCA GAATGAGTCC TTTGTTCCCG CTGGAAAATC TCCTGAACCA 
    AGATTTTTGA TTGATTATAT TCAAAACCTA AAATCTTCTG AGAAATCTTT 
    GAAAGAACAG TTAGAAATCG CAAAGAGAAA AGAAGCGTCA TGCATTGTAC 
    AATATGCGAA ACGGGAACAA GAAATGGCAG AATTGAAGTC AGCTGTTCGC 
    GATTTGAAAT CTCAACTCAA GCCAGCGTCA ATGCAGGCGA GGAGGTTGTT 
    ACTGGATCCA GCAATTCATG AAGAATTTTC ACGTCTGAAG AATCTAGTAG 
    AGGAAAAAGA CAAGAAGATC AAGGAACTCC AGGACAACAT TGCAGCAGTT 
    ACTTTTACTC CTCAAAGCAA GAATGGAAAG ATGCTTATGG CAAAGTGCAG 
    AACCCTGCAA GAGGAAAATG AGGAGATTGG GCACCAAGCT GCCGAAGGAA 
    AGATTCATGA ACTAGCAATA AAGCTTGCAA TGCAGAAGTC TCAAAACGCG 
    GAACTTAGAA GTCAATTTGA AGGACTGTAC AAACACATGG AGGAATTAAC 
    TAATGATGTT GAGAGATCAA ATGAAACGGT GATAATATTG CAAGAGAAAC 
    TGGAAGAGAA AGAGAAGGAG ATAGAGAGAG TAAAGAAAGG ACTGGAAATT 
    GTGTCTGAGC TAGTAGGTGA CAAGAAAGAT GAAGTTGATG AAATTGATGA 
    AGATGCAAAA GAAGAAATTG CTGGTGGAGA ATAGGAATTT GTAGCTTTCA 
    AAAAATGTTT TGTACATTTT GAAGTTCAAA ATCACATTTC TTCATTCGTT 
    ATCTGTTTCA TGAAACAGAA AGTTCTAAAC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G54170.1 [+] show detail - FKBP12 interacting protein 37
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT3G54170.1

    Model type
    Protein coding
    Short Description
    FKBP12 interacting protein 37
    Curator Summary
    Encodes protein that binds FKBP12. This interaction is disrupted by FK506 but not by cyclosporin A.
    Computational Description
    FKBP12 interacting protein 37 (FIP37); Has 21268 Blast hits to 13212 proteins in 1142 species: Archae - 433; Bacteria - 2157; Metazoa - 10991; Fungi - 1638; Plants - 938; Viruses - 51; Other Eukaryotes - 5060 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR