F20602

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20602

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20602

Determination of introduced cDNA(s)

  • RAFL05-14-K14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-K14 - Resource: pda02604

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-K14 - full reading 
    ACGGAGATTG TAACAAGGAA ACCGCCGTCG CCGGATCTGA TAGTGCATAT 
    CCATGAAGTA GAAGACGAAG AAACTTACTT TCTGATCTTA GAACGGAGTA 
    TATGTACAGA AGATTCGCGT CCCTCAATTT TTGATCTCAA GGGTCGGGTT 
    TACCTTTTTT TCCTTCTTAT TTTTGGTGGC TTTGCGTTTT CTCATTCGAC 
    GATTTCTGGA TTTGGGGATT TCAAAACCAT GAGGAAGAAG CTCGATACTC 
    GGTTCCCAGC TGCTCGTATT AAAAAGATTA TGCAAGCTGA TGAGGATGTT 
    GGCAAGATAG CTTTGGCAGT GCCTGTCTTA GTCTCAAAAT CTTTGGAGTT 
    GTTCTTGCAA GACCTTTGTG ATCGTACATA TGAAATTACC CTTGAAAGAG 
    GTGCCAAGAC TGTGAGCTCA TTGCACCTAA AACATTGTGT GGAAAGATAT 
    AACGTGTTTG ATTTTCTGAG GGAAGTTGTG AGTAAGGTGC CTGACTATGG 
    CCATTCCCAA GGGCAAGGAC ATGGTGATGT TACCATGGAT GATCGCAGCA 
    TCTCCAAGAG AAGGAAGCCC ATCAGCGATG AAGTGAATGA CAGTGACGAG 
    GAATATAAGA AAAGCAAAAC GCAAGAGATA GGGAGTGCTA AGACCAGTGG 
    CAGGGGTGGT AGAGGAAGAG GGCGAGGAAG AGGTCGTGGT GGACGAGCTG 
    CAAAAGCAGC CGAAAGAGAG GGTCTCAACC GCGAGATGGA AGTAGAAGCC 
    GCCAATTCTG GACAGCCACC ACCAGAAGAC AATGTCAAGA TGCATGCGTC 
    AGAGTCATCA CCACAAGAGG ATGAGAAGAA AGGCATCGAC GGCACAGCAG 
    CATCGAACGA AGACACCAAG CAACACCTTC AAAGTCCCAA AGAAGGCATT 
    GACTTTGATC TCAACGCTGA ATCCCTCGAC CTAAACGAGA CCAAACTGGC 
    ACCAGCCACA GGCACAACCA CAACCACAAC TGCAGCAACA GACTCTGAGG 
    AGTATTCGGG CTGGCCTATG ATGGACATAA GCAAAATGGA TCCAGCACAG 
    CTTGCTAGTC TGGGTAAGAG GATAGACGAG GATGAGGAAG ATTATGACGA 
    AGAAGGCTAA GTCATAACAG CACTATAGGA TATATAGAGT AGCAGCGTTT 
    AGCAGTTTGT CTAGAAAATG CTTCTTCTGT CATCAAAATC TTCTCCTGTT 
    TCCATTTATT GTATGAACCA AAGATTGCAT GCACTCTATG AAACTTAATT 
    TATTCTCG

    Gene models with high sequence identity

    1. AT3G12480.1 [+] show detail - nuclear factor Y, subunit C11
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Histone-fold 2.2e-19
    HMMPanther NEGATIVE COFACTOR 2 TRANSCRIPTIONAL CO-REPRES 2.8e-162
    HMMPanther HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELAT 2.8e-162
    HMMPfam Transcription factor CBF/NF-Y/archaeal histone 3.1e-19
    Gene3D Histone-fold 6.4e-24

    See the detailed result >

    AT3G12480.1

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit C11
    Computational Description
    "nuclear factor Y, subunit C11" (NF-YC11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G19490.1); Has 1099 Blast hits to 1099 proteins in 222 species: Archae - 0; Bacteria - 6; Metazoa - 308; Fungi - 314; Plants - 371; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR