F20610

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20610

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20610

Determination of introduced cDNA(s)

  • RAFL14-27-D04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-27-D04 - Resource: pda18395

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-27-D04 - full reading 
    GATAGAACCA AAAAAAAAAC ACCTCCGATC TCGGCGAGAG AAAGAGAAAC 
    GATCTGTGAG AGAGAATGGA TCAGATCTTG AACAAGGTAG GCTCGTACTG 
    GTTAGGTAAG AAGGCGAACA AGCAGCTCGA TTCCGTCGGT GACGATATCA 
    ACTCTTTGTC TTCGAGCATC GAAGGAGGAA CAAAATGGTT GGTGAACAAA 
    ATCAAAGGAA AAATGCAGAA GCCATTGCCC GAGTTACTAA AGGAGTTTGG 
    TTTGCCTGTG GGGATCTTTC CACGTGATGC AACCAACTAC GAGTTCAATG 
    AACAGACGAG GAAGTTAACT GTCTTTATTC CATCAATCTG CGAAGTTGGT 
    TACAAAGATA CATCAGTCTT GAGATTCACC ACTACAGTTA CCGGATTTCT 
    CGAGAAGGGA AAGCTAGCTG ATGTTGAAGG GATGAAGACA AAAGTAATGA 
    TATGGGTTAA AGTCACAAGT ATCTCTGCTG ATTCTTCAAA GGTACATTTC 
    ACGGCAGGGA TGAAGAAAAG CAGAAGCCGA GATGCTTATG AGGTTTTAAG 
    AGATGGCGTT GAGATTGATA AATTCTAGCT CTGTTTTGCT GCCTCAGTTC 
    CCTCCGCGGA GTTAAGCTCC TCCCAAGCTT CGATCCAGGT GACCATTCCA 
    GTTGCAAGTG TGATGAAGTA AGGATCAACC TTCCCAAGTT TCTCTCTCAC 
    GAGCTTGGCC AGCTCGAGGT AGCATTGCTG CACCGAAGTG CACTCTTTAG 
    GAAGAGTCAC GGATTGAAAG AACGGAATCG CCTCTTCCTG CCAAAATATT 
    CCGTTGTATT CCTTTTTCAG GTTCACGAAT GGGTTGCTGG CTTTGCTGTG 
    CCATATGTAA GGCAAACCCG TCTTCACTCC CCATCCCATG TGGTCACATA 
    TCACCTATAT TATTGGACAA ATGTAACGGT ATTACAGTAT AACCAATGCA 
    CAAAAGCAAG ATAAGGAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G08890.2 [+] show detail - Protein of unknown function, DUF538
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF538 1.8e-27
    HMMPfam Alpha-1,4-glucan-protein synthase, UDP-forming 4.9e-45
    Gene3D Protein of unknown function DUF538 1.5e-47

    See the detailed result >

    AT3G08890.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Computational Description
    Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR