F20649

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20649

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20649

Determination of introduced cDNA(s)

RAFL08-12-B15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-B15 - Resource: pda04698

full reading [+] show sequence

CCCTCTTTGC TCTCACTATC AAAACTCTGA ATTTCGATTT CAATGGAGTC 
ACGCGTGCTG TTACGCGCCA CCGCGAATGT CGTTGGAATT CCGAAATTGA 
GACGACCAAT CGGAGCGATC CACCGTCAAT TCAGCACTGC ATCGTCTTCC 
TCGTTCTCGG TTAAACCAAT CGGAGGAATC GGAGAGGGAG CGAATCTGAT 
CTCCGGTCGT CAGCTTCGTC CAATTCTTCT TCTCGATTCG TCGGCGATCA 
ACGGAGGAGA GAAAAGAGAA ATTCTCAAAC CGGTTAAAGC CGCCGCTGCT 
GAAGGTGGAG ATACCGCTGG GGATGCTAAA GTTGGATTCC TCGCCAAGTA 
TCCATGGCTA GTCACTGGAT TCTTCTTCTT CATGTGGTAC TTCTTGAATG 
TGATTTTCAA CATCCTTAAC AAGAAGATCT ATAATTACTT CCCTTATCCC 
TATTTTGTAT CGGTGATACA CTTGTTCGTG GGAGTTGTTT ACTGCTTGAT 
CAGCTGGTCC GTGGGTCTTC CTAAACGTGC CCCGATTGAC TCGAACCTCC 
TCAAGGTATT GATACCAGTC GCAGTCTGTC ACGCCTTAGG CCATGTCACT 
AGCAATGTCT CTTTCGCTGC GGTTGCTGTC TCCTTCACTC ACACCATCAA 
AGCACTTGAG CCATTCTTCA ATGCGGCTGC TTCTCAATTC ATTATGGGAC 
AATCCATCCC CATAACACTA TGGTTGTCTC TAGCTCCTGT TGTTCTTGGT 
GTTGCAATGG CTTCACTAAC TGAGCTATCA TTCAACTGGC TCGGTTTCAT 
CAGTGCTATG ATATCAAACA TTTCTTTCAC TTACCGAAGC ATCTTCTCCA 
AGAAAGCCAT GACTGATATG GACAGTACAA ATGTCTACGC TTACATCTCC 
ATCATCGCAC TCTTCGTCTG CATTCCTCCT GCCATCATCG TTGAAGGTCC 
TAAACTACTT AACCATGGTT TCGCCGACGC GATTGCTAAA GTTGGAATGA 
CTAAATTCAT CTCTGATCTC TTCTGGGTTG GAATGTTTTA CCATCTCTAC 
AATCAGCTGG CTACCAATAC CTTGGAGAGG GTTGCACCGC TGACTCACGC 
GGTTGGAAAC GTTCTGAAAC GTGTGTTCGT GATCGGTTTC TCCATCGTTA 
TCTTCGGAAA CAAGATATCG ACACAGACAG GTATAGGAAC AGGAATAGCC 
ATTGCTGGAG TTGCAATGTA CTCTATCATT AAGGCCAAGA TCGAAGAAGA 
GAAACGGCAA GGAAAGAAAG CATAGAAAGC AGCTGAAGAC GGCGGTCGAC 
AGTTGCATAA ACAAGTTCTC CGATGGATAT ATATATATCT ATATAATAAA 
TAACCAAATG CAATAGTATG TTGTATTGTA CCATCAACCA TTGTTTTCGA 
GTTTTTCCTT TCTTTGTTTT TTTTTTTTGC TTTCTGAAAA GTTATATATA 
AATTTTTTAT TCTGCTTCTT CTCTTTTTAA TGGAGAACAT TTTCATTTCC 
ATTTCTTCTG ATATGCAATT ATCTTAACGG ATAAAAGGCA TAATAATGTA 
TTTATTTGCT CTTTCTCTTG GAGCATATAC CCACAAAAAA AAAAAAAAAA

Gene models with high sequence identity

AT5G46110.1 [+] show detail - Glucose-6-phosphate/phosphate translocator-related
E-value: 0; Score: 99.87

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Tpt phosphate/phosphoenolpyruvate translocator	5e-188
HMMPanther	SOLUTE CARRIER FAMILY 35	2.7e-114
superfamily	Multidrug resistance efflux transporter EmrE	1.6e-05
superfamily	Multidrug resistance efflux transporter EmrE	2e-05
HMMPfam	Protein of unknown function DUF250	1.6e-34

See the detailed result >

AT5G46110.1

Model type: Protein coding
Short Description: Glucose-6-phosphate/phosphate translocator-related
Curator Summary: mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
Computational Description: ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2548 Blast hits to 2546 proteins in 418 species: Archae - 2; Bacteria - 319; Metazoa - 501; Fungi - 418; Plants - 1031; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
Link: InterPro Scan - TAIR