F20714

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20714

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F20714

Determination of introduced cDNA(s)

  • RAFL14-04-N08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-04-N08 - Resource: pda18088

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-04-N08 - full reading 
    AAAGAGAGAG ATTGAGGATG TCTCACAGTC ACGGGAACGC TTCGTCGGTG 
    AACGATCCAC GGCAGCCTTC GGCGGCAAAG CCTTACATTC CACGGCCTGT 
    AGCGCCGGAG GATCTTCCCG TTGACTACTC CGGATTCATC GCCGTTATCC 
    TCGGCGTCTC CGGCGTTATG TTCAGGTACA AGATATGCTC GTGGCTTGCA 
    ATTATATTCT GTGCACAATC TCTGGCCAAC ATGAGGAACT TGGAAAATGA 
    TTTAAAGCAG ATCTCCATGG CTATGATGTT TGCTATAATG GGATTGGTTA 
    CAAACTACTT AGGGCCTAAC AGACCCGCGA CAAAGAAATA ATCCTCATGT 
    CTTAAGAGTA GTATGCTTTT TTTTGATAAA CCTTGTATGG CTCTTGTTTC 
    CGCACCAGAG ATTGCTAGTG GTTTGTCTTT GTGTTTTCGA CTCTCTAATC 
    CTTGAGTAGC AAACTAGAAC CTTGAGCTCT TGCTCATTTG TGGAGTTCAA 
    AGACTTTTCA GTCCAGATGC AAAAAATGTG AAATCCGACT TTTTCCCAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT5G07960.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Uncharacterised protein family UPF0139 8.4e-46
    HMMPanther Uncharacterised protein family UPF0139 3.5e-42
    Coil coiled-coil 0
    BlastProDom Uncharacterised protein family UPF0139 5e-40

    See the detailed result >

    AT5G07960.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR