F20735

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20735

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20735

Determination of introduced cDNA(s)

  • RAFL09-19-G24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-G24 - Resource: pda05511

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-G24 - full reading 
    AAAACAGAAA GGCCAGAGAG ACGAAAGAGA GAGGCATTAG GGTTTAGGAT 
    TAGATTTTAG AAAAGGGTTT AGATCTCTAC CAACTGGTTT GTTAAGAACA 
    TAATCTCCTT ACCACATTTT TACTCTTGAA AACATTTTGA TCTGTTTTTG 
    TTATCTTCAC CAAAAGACTT GACTCCAAGA AACAAGAAGA AGAATCAAGA 
    AACAAGTTCA AGAACCAGCT TTTAATGAAA TCTCTACTTC AAAAAGGAAA 
    CTTGCTTTAA GGAGGATGGA TCTTTTGTTT TCTTGAATCT TTTGTGTGGG 
    TAAAACATTT TGTATTATCA AGATTTTGAT TTGAGGAGAT AAAGAGTTTG 
    TTGTTAAGTT TGTGTTCTTG GGATCATCAA GAGTTAAAAC AAAAAAAAAA 
    GACATTTCTT TTTTCCTTCT TCAATTTGAG ATTTAGTGTC TCCTTTAACA 
    CCCACAAAGC CAGCAGATGC TTTCCTGATG ACTCCTTGTT TGATCTGATC 
    ATAAGAAGAA GAAGACTATG GCCACTTATT ACAAAACTGG CTCAAGTGAG 
    ATTTATTCCA GACCAGAATT TGTCCCTGGA AACGCAATGA ACTACACAAA 
    TTCTTTCACA GAGACATTTC CTAGAGATTC AACTAATAAT GTGTCACCTT 
    CAAAAGAGAT TCAAGTGTTG TCAAGCCTTG GTGGAGTTTC ACAAATGGTT 
    GAGATTCAAG ATTCTGGTTC TTGGAGAGAT CAAGAAGACA ATGACAGGAA 
    TCGCTTCCCG GTGATGAGGC GTCTTGGCCT CAGCTCGCAG ATTGAGACAT 
    CGAGAGGCAA TAATAACAAT GAGTATGCAA CACAGGTTGT TTCGGGATTT 
    ACTCGAACCA TTCACAACTC AAAGTATCTC AAAGCTGCTC AAGAGCTTCT 
    TGATGAAACT GTTAATGTTA AGAAAGCTCT AAAGCAGTTT CAGCCAGAGG 
    GAGATAAGAT TAATGAAGTG AAAGAGAAGA ATCTTCAGAC GAATACTGCT 
    GAAATCCCTC AAGCAGAGAG GCAAGAATTG CAGAGCAAGT TGTCGAAACT 
    TTTATCGATA TTAGACGAGG TGGATAGAAA TTACAAGCAG TATTACCATC 
    AGATGCAGAT AGTCGTGTCG TCTTTCGATG TAATAGCCGG ATGTGGAGCA 
    GCCAAACCAT ACACAGCCCT TGCGCTTCAG ACCATCTCGA GGCATTTCCG 
    TTGCTTAAGG GATGCGATAT CCGGACAAAT CTTGGTGATA AGGAAAAGTT 
    TAGGAGGGGA ACAGGATGGA TCAGATGGGA GAGGAGTGGG GATAAGCAGG 
    TTAAGGAATG TTGATCAACA GGTAAGGCAA CAAAGAGCGT TGCAGCGGTT 
    AGGTGTGATG CAACCTCACA CTTGGCGGCC TCAACGCGGT TTACCAGATT 
    CTTCTGTTTT GGTTCTCCGT GCTTGGCTAT TTGAGCATTT CCTCCACCCT 
    TATCCAAAGG ATTCAGACAA GATCATGCTC GCTAGACAAA CGGGGTTGAG 
    CCGAGGCCAG GTATCGAACT GGTTCATAAA TGCGCGTGTG CGTCTCTGGA 
    AACCGATGGT GGAGGAGATG TACAAGGAGG AATTCACAGA TGCATTGCAG 
    GAGAATGATC CCAACCAGTC TTCTGAAAAC ACACCAGAAA TCACCGAGAT 
    TCAAGAGCTG CAAACTGAGT CTAGTTCCAA CAATGGGCAT GTACCTGGTG 
    TGGCAAGCAG TAGCATGAGA CAAAACACAG TGGCCCATGG TGGTGACCGG 
    TTCATGATGG TGACTGACAT GACAAGAAAT GGTAATGGTG GGATGTCTTT 
    AACGTTGGGG ATTCAGAATT CCGATGCTCG TGGCGATGTT CCTATGTCCG 
    GTGGGATAGA TAACTACAAG AATATCATCT CGGGAACCGA TCTACAGTAC 
    TTAAACTCTC GCAACCACCA GCACCAGATT GGCTCTTCAC AATTGTTGCA 
    TGATTTTGTA GCTTGAGGAG AATAGAAAGG TGTAGAAATG GATTCTTTTG 
    TGAAAGTAAA CCCAAAAAAC GAAATTGTAG ATTAATGAGA AAACATGAGG 
    AGACAATCTG AGATTAGACA CGATCTGTTT CATATTTAAA CATGAGGAGA 
    CCTAATTATA TGGTTAGAGG TACACG

    Gene models with high sequence identity

    1. AT2G16400.1 [+] show detail - BEL1-like homeodomain 7
      E-value: 0; Score: 99.76

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart POX 8.9e-72
    HMMSmart Homeobox 5.9e-09
    Gene3D Homeodomain-related 5.4e-24
    HMMPfam POX 7.3e-45
    HMMPfam Homeobox 3.6e-06
    Coil coiled-coil 0
    superfamily Homeodomain-like 3.7e-17
    ProfileScan Homeobox 11.564
    HMMPanther BEL1 HOMEOTIC PROTEIN 6.7e-131
    HMMPanther HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6.7e-131

    See the detailed result >

    AT2G16400.1

    Model type
    Protein coding
    Short Description
    BEL1-like homeodomain 7
    Computational Description
    BEL1-like homeodomain 7 (BLH7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 4799 Blast hits to 4799 proteins in 334 species: Archae - 0; Bacteria - 20; Metazoa - 1820; Fungi - 319; Plants - 2475; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR