F20843

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20843

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20843

Determination of introduced cDNA(s)

  • RAFL09-47-J15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-J15 - Resource: pda06337

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-J15 - full reading 
    GTGAATCAAA AACCAGCGAT CAAAAGTCTT CTTCTTGTGA ATCTGTGATC 
    TCAAAAGCTC CTTTAACCAT GGCGACTTTT GATGATGGAG ATTTCCCAGC 
    TCAAACCCAT TCTCCGTCTG AACACGAAGA CTTTGGTGGC TACGATAATT 
    TCTCCGAAGC ACAGCAACCT CCGACTCAAC ATCAATCCGG TGGATTCTCT 
    TCTTTCAATG GAGATCCTGC TTCCCCAAAT GGATATGGAT TTGGTGCTTC 
    TTCACCTAAC CATGACTTTT CCTCGCCTTT TGAATCTTCC GTTAACGATG 
    CTAACGGAAA CGGCGGCGGC AGCGGTGGTG ATGCGATCTT CGCTTCCGAT 
    GGTCCGATTC TTCCAGATCC AAATGAGATG AGAGAGGAGG GTTTCCAACG 
    CCGTGAGTGG CGCCGTTTGA ACACCATTCA CCTTGAGGAG AAGGAAAAGA 
    AAGAGAAGGA GATGCGGAAT CAGATCATAA CTGAAGCAGA AGATTTCAAG 
    AAAGCCTTCT ATGAGAAAAG AGACAAGACC ATTGAGACCA ACAAGACTGA 
    TAACCGTGAA AAGGAGAAGC TATACTGGGC TAACCAAGAG AAGTTCCACA 
    AAGAAGTTGA CAAGCATTAC TGGAAAGCAA TTGCAGAGCT AATCCCTCGT 
    GAGGTTCCCA ACATTGAGAA AAAGAGAGGG AAAAAGGATC CGGACAAGAA 
    ACCATCAGTG AATGTTATTC AGGGTCCTAA ACCTGGGAAG CCAACTGATC 
    TAGGGAGAAT GAGGCAGATA TTCTTGAAGC TCAAGACAAA TCCCCCACCT 
    CACATGATGC CGCCTCCTCC TCCAGCCAAA GATGCCAAAG ATGGGAAGGA 
    TGCGAAAGAT GGCAAAGATG CAAAAACTGG GAAAGATGGG AAGGATGCAA 
    AAGGAGGGAA AGACGCTAAG GACTTAAAAG ATGGGAAACC TGCAGATCCA 
    AAGGTGACAG AGGAAAAACG TCCTTCACCT GCCAAAGACG CAAGTGTTGA 
    AACAGCGAAA CCTGATGCTG CTGCCTCGGG AGAGGGAGAG AAACCTGTAG 
    CTGTGACTGA GGCCGAGGGA ACCAAGGCGG AGTGAAGGGT CTTTAGTATT 
    ACTGTTGGGG GATTATTTGA TATTGATGAA GTCACAATAG CTGCGGGCGA 
    AAATAAGAAG AGGTAAGTTA TGTGCACATA GAAGCTCTTA TGGGCGCTGT 
    CTGTGAGCAC AACATTTCCT CTTCTGGGGA GAGAATTTTA GTCCTTTTGT 
    TTTTGGTTAT TATTTTTTAT TACCATTATA TTTGTTCTGC AAAATTTGGT 
    TATTGTCTTG GATGATGTTC ACCTTAAATC ATTTTGGTTC CACGTATTTT 
    ACATTTATAA GACTTGAGAG AAGTAAAGGT TTGTTGGATG AATCATTTGA 
    TTGTATTGTG TGATGTGGGC ATGAGGTAGT TGAGGAGTGT CATGGCATGT 
    GAACTATCTT TCTTT

    Gene models with high sequence identity

    1. AT2G20760.1 [+] show detail - Clathrin light chain protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Clathrin light chain 3.3e-07
    HMMPanther Clathrin light chain 6.9e-09
    Coil coiled-coil 0

    See the detailed result >

    AT2G20760.1

    Model type
    Protein coding
    Short Description
    Clathrin light chain protein
    Computational Description
    Clathrin light chain protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: Clathrin light chain protein (TAIR:AT2G40060.1); Has 1791 Blast hits to 1279 proteins in 282 species: Archae - 0; Bacteria - 563; Metazoa - 557; Fungi - 96; Plants - 161; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR