F20845

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20845

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20845

Determination of introduced cDNA(s)

  • RAFL09-48-J22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-J22 - Resource: pda17755

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-J22 - full reading 
    GATGCTTTCT TCAATATCAT TCTAAAAATA CTTTCTTCAC GTGCAAGCAT 
    TTGTGATCTC TCATGGCTTC TTCTTCTTCT TCATCTTCTT CGTCTCACAT 
    AAGGAGACAC CATGTCTTTT CGCGCTTCCA CGGTCCAGAT GTCCGTAAAG 
    GGTTTCTCAG TCATTTACAC AGTCTCTTTG CAAGCAAAGG TATCACGACT 
    TTCAATGATC AGAATATCGA GAGAGGCCAG ACGATCGGAC CTGAGCTCAT 
    ACAAGGGATT AAAGAAGCTA GAGTCTCGAT CGTTGTGCTC TCGAAGAATT 
    ACGCTTCTTC CAGCTGGTGT TTAGATGAAC TTGTGGAAAT CTTGAAGTGC 
    AAAGAAGCTT TGGGGCAGAT TGTGATGACG GTTTTTTTTT AAGTTGATCC 
    GTCAGATGTT AAGAAACAGA GTGGAGTGTT CGGGAAAGCT TTTGAGAAGA 
    CTTGTCAAGG GAAAAATGAG GAGGTGAAGA TCCGATGGAG AAATGCTTTG 
    GCACATGTCG CTACCATTGC TGGGGAACAC TCTCTTAATT GGGATAATGA 
    AGCAAAGATG ATCCAAAAGA TTGCTACAGA TGTTTCAGAC AAACTGAATC 
    TCACACCGTC GAGGGATTTT GAGGGGATGG TAGGGATGGA AGCTCACTTG 
    AAAAGATTGA ACTCTTTGTT ATGCCTGGAA AGTGATGAAG TCAAGATGAT 
    TGGAATTTGG GGTCCAGCGG GAATTGGTAA GACTACCATT GCTAGAGCTT 
    TATTCGACGA CAGACTCTCT AGCAGTTTTC AACATAAATG TTTTATGGGG 
    AACCTCAAGG GAAGTATTAA GGGTGTTGCT GACCATGATT CCAAGTTGAG 
    GTTGCAAAAG CAACTTCTGT CTAAGATTTT TAAGGAAGAG AATATGAAGA 
    TACATCATTT AGGCGCAATA CGAGAAAGGC TACACGATCA AAGAGTGCTC 
    ATCATTCTTG ACGATGTAGA TGATCTAAAG CAATTAGAGG TATTGGCTAA 
    AGAAATCTCT TGGTTTGGTT CTGGAAGCCG AATCATCGGT ACCACAGAAG 
    ATAAGAAGAT TTTGAAGGCA CATGGGATTC ACAATATCTA CCGTGTGGAT 
    TTTCCATCGA AGAAAGACGC TCTTGAGATC TTATGTCTCT CTGCATTCAA 
    ACAAAGCTCT ATACCAGATG GTTTTGAAGA GCTTGCCAAT AAAGTAGCTA 
    AGCTTTGCAG CAACCTTCCA TTAGGCCTTT GTGTCGTGGG TGCATCTTTG 
    CGTGGGGAGG GCAATCAAGA GTGGGAACGT CTATTATCTA GGATCGAATC 
    TAGTCTTGAT AGGGATATCG ATGACATATT ACGAATCGGA TATGACAGAT 
    TGTTGACGAA TGATAAATCT CTATTCCTTC ACATTGCATG CTTCTTCAAC 
    TATGCAAAGG TTGATAATGT GACAGCCTTG TTAGCTGACA GTAACTTGGA 
    TGTTGGAAAT GGTTTCAATA CCCTAGCCGA TAGATCTCTC GTGCGTATAT 
    CTACCTATGA TGATGGGATA TCTGTGCTTT CTGATAGTAA CTTGGATGTT 
    GGAAATAGTT TTAAGACCCT AGCAGATAAA TTTCTCATGC ATACTTCCCT 
    ACGGCCGAAT AGAGATGCAC CATCTACTAC AACAATTGGG TAGACAGATA 
    GTTCTTGAAC AGTCTAAGGA GCCCGGGAAA CGTGAATTTA TAATTGAGCC 
    AGAAGAGATT CGTGATGTAC TGACAAATGA AACAGGTACT GGATCAGTCA 
    TTGGTATATC ATTTGATACA TCCAATATCG GAGAGGTTTC TGTAAGTAAG 
    GATGCTTTTG AAGGAATGCG AAATCTCCGT TTCCTAAGAA TCTATAGGTT 
    GTTAGGTGGT GAAGTTACTT TGCAAATACC AGAAGATATG GATTATATAC 
    CTCGTCTTAG GTTACTATAT TGGGATCGCT ATCCAAGAAA AAGTCTTCCT 
    CGGAGATTCA AGCCGGAACG TCTCGTGGAA CTCCATATGC CACGCAGCAA 
    TCTCGAGCTG CTCTGGGGAG GAATCGAGCC CCTTCCTAAT CTCAAGATCA 
    TAAATCTGAA CCGATCCTAT AGGTTGAAAG AAATCCCAAA TCTTTCGAAA 
    GCCACTAATC TCGAGAGATT GACACTTGAG AGCTGCTTAA GTTTGGTGGA 
    GCTTCCCTCT TCTATTTCTA ATCTACACAA ACTGGAGATT CTAGATGTTA 
    AATTCTGCTC TATGCTACAA GTTATTCCCA CCAACATCAA CTTAGCATCT 
    CTTGAGAGAC TCGACGTGAG TGGTTGCTCA CGATTGAGAA CTTTTCCAGA 
    TATCTCCAGT AACATCAAGA CACTCATTTT CGGAAATATA AAGATAGAAG 
    ATGTCCCTCC ATCAGTTGGA TGTTGGTCTC GTCTTGATCA ACTTCACATT 
    AGCAGCCGAA GCCTCAAGAG ATTGATGCAT GTACCACCAT GTATAACTTT 
    GCTATCTCTG AGAGGTAGTG GTATAGAGAG GATTACAGAT TGCGTCATAG 
    GTCTCACTCG TCTACATTGG CTGAATGTCG ATAGCTGCAG AAAACTCAAG 
    TCAATTCTGG GTCTCCCCTC CTCCCTCAAG GTCCTAGATG CAAATGATTG 
    TGTATCACTC AAGAGAGTAC GCTTCTCTTT CCATAACCCA ATGCACACAC 
    TCGATTTCAA CAACTGTTTG AAACTGGATG AAGAAGCAAA AAGAGGAATC 
    ATACAACGAT CAGTGTCCAG GTACATATGC TTACCATGTA AAAAGATCCC 
    TGAAGAGTTC ACTCACAAAG CAACAGGCAA ATCCATAACC ATCCCTCTGG 
    CACCTGGTAC TCTCTCTGCT TCCTCAAGGT TTAAGGCTTC CATTCTCATT 
    TTGCCAGTTG AGAGCTACGA AACTGAAGGT ATAAGTTGTA GTATAAGAAC 
    CAAAGGAGGT GTTGAAGTTC ATTGCTGCGA GCTTCCATAT CACTTTTTGC 
    GTGTTCGGTC AGAACACCTG TTTATATTTC ATGGTGACTT GTTTCCCCAA 
    GGAAACAAAT ACCATGAAGT GGATGTGACT ATGAGCGAGA TTACATTTGA 
    GTTCAGCCAC ACTAAAATCG GTGACAAGAT TATTGAGTGT GGTGTACAGA 
    TCATGACAGA GGGAGCTGAG GGTGACAGTA GCAGGGAATT GGAAGTTTTG 
    AAACTGAGAG TAGCAGCAGC CCAGTTGGGA GATTTGTTGG GAAATTTGAA 
    TTTGGAGGCA ACAACAATCA CCACACAGAT GGAAATGGAG ATGGAAACTA 
    TGAAGCAGAA GGTTCCAAGT TCTCTCAAGA TGAAAACATC AAAACCAGCA 
    AACGTTGGTT TTATGAGTTG GCTTCGGAAG CTTGGTCAGT GAAGAAGATG 
    AATTCTCATG GAGTCTCATG AAGACCAAAC CAGTTTTTGG CACTTTCTTA 
    GCTCCTTAAT CATCTTCATA AGGTAGGAGA TTGGGAATTT CGACGCAGCA 
    CCTGATTCTC CAGTGATCAA ATCTAAGTCC ACACAAAGAG ACCATATTGT 
    CCAATCAGTT CCAGATACTT GGTGCATTGC CTTCTGTTGT GAGCATAAAA 
    CGGCAAACCC TATGAAAGAA GGTTGATAGC ATTAGAGAAA ACAGAGCATT 
    GCAGCTCACA CAGTCCACCC ATGAACTGAT GATTTTTCCG GATTGATTGC 
    ATCTTAGAAT CATAATCCTG TTTCCATTGG CCTTAATTAG CTGTTTAAGT 
    ACTAAGAAAA GTCTTGTTAC CTTGTGATCT AGTTAATTAG CTGTTTAAAT 
    ACTAAGAAAA ATCTTGTTAC CTTGTGAATT ACTTACAAAA

    Gene models with high sequence identity

    1. AT5G41740.1 [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 6.7e-38
    superfamily Toll-Interleukin receptor 5.1e-30
    superfamily P-loop containing nucleoside triphosphate hyd 2.2e-21
    superfamily "Winged helix" DNA-binding domain 0.000000011
    superfamily Toll-Interleukin receptor 0.00000073
    FPrintScan Disease resistance protein 2e-17
    FPrintScan Disease resistance protein 2e-17
    FPrintScan Disease resistance protein 2e-17
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00000029
    HMMPanther WERNER HELICASE INTERACTING PROTEIN 0.00034
    HMMPanther HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED 0.00034
    Gene3D no description 1.6e-21
    ProfileScan Toll-Interleukin receptor 19.832
    HMMPfam Leucine-rich repeat 0.17
    HMMPfam LRR_3 0.000024
    HMMPfam Toll-Interleukin receptor 2.6e-25
    HMMPfam NB-ARC 2e-38
    HMMSmart Toll-Interleukin receptor 0.00000000000022
    HMMSmart ATPase, AAA+ type, core 0.0026

    See the detailed result >

    AT5G41740.1

    Model type
    Protein coding
    Short Description
    Disease resistance protein (TIR-NBS-LRR class) family
    Computational Description
    Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR