F20911

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20911

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F20911

Determination of introduced cDNA(s)

  • RAFL05-18-H11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-H11 - Resource: pda07406

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-H11 - full reading 
    TGCGGTTGCC GCACCTGCTT CGCTTCTCCT CTCTCGCTCT CTACTCAGGA 
    CTCGTTTACT CTTTCAAAGC TAAGCTTTCA AGATGCAAAA CGAAGAGGGT 
    CAGGTCACTG AGCTTTACAT TCCTAGGAAA TGTTCTGCTA CTAACCGGTT 
    GATCACATCC AAGGATCATG CCTCTGTTCA GCTCAACATT GGTCATTTAG 
    ATGCTAATGG CTTGTACACC GGACAGTTCA CAACCTTTGC TCTCTGCGGT 
    TTTGTCCGTG CTCAGGGAGA CGCTGACAGT GGTGTCGACA GGTTGTGGCA 
    GAAGAAGAAG GTTGAAGCCA AACAAAACTA AGAGCTTAAT CTGTCTTGTT 
    TTTTGTCGAA TCTTGTTTTT TTTTTTCCGA AAGATTGCCT CATACTGAAG 
    TAATGATTTT GGCTTTGGGT CGTGGAACTT AACTTAAATG CTTTTGTGCA 
    CCATGTCTTC TAATTTTTCA CCAGTTCGAT ATAGTAAAAA AAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT5G27700.1 [+] show detail - Ribosomal protein S21e
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S21e, conserved site 0
    HMMPIR Ribosomal protein S21e 2.6e-50
    HMMPanther Ribosomal protein S21e 5.8e-44
    BlastProDom Ribosomal protein S21e 3e-23
    HMMPfam Ribosomal protein S21e 2.6e-38

    See the detailed result >

    AT5G27700.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S21e
    Computational Description
    Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e, conserved site (InterPro:IPR018279), Ribosomal protein S21e (InterPro:IPR001931); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT3G53890.2); Has 660 Blast hits to 660 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR