F20916

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20916

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20916

Determination of introduced cDNA(s)

  • RAFL05-01-J03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-J03 - Resource: pda00760

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-J03 - full reading 
    CTCTCCTTTT CTTCCTCAAC TCATAAACCC GATCGGCCGA TTCCTTCACA 
    ATTATCCTTA AAATTTTCGA TTTTGATTAT TGGGTTTCTC TCTGATCATG 
    GCGGTTGTTG AGACTGGAGC AGCAGCTACT GCTGCTGATG CAGGAGGAGT 
    CGTGATCCAG CCGCCGCCGT CTTCACCACC ATCTTCAATG ACTAGTCAAG 
    ATTCCGGCGT TTCTTCCGAT GATCAGAACC ATCACTCTAG GATCGATCAA 
    GTTCTCCGGC ACGATCAAGG TCTTTACAGC AAGATCGGGT CACACGTGGC 
    GAGATCCGAC GGCGTTGACG GTGGTGAGAG CTTTAAGCGT GATATGAGAG 
    AGCTTCAGGA GCTTTTCTCT AAGCTTAATC CTATGGCTGA AGAGTTGTTC 
    CTCCTTCTCT GAATAAACAA GGAGGTAACG GTGTTAACGG TGGTTTCTTC 
    ACCTCTGCTG GTTCCTTCTT CCGCAACAAT GGCTTTGCTG GTACCGGAAA 
    TGGCGGATAC GGTAACGAAA ACGGTGGTTT CCGACGGAAG AAGAGTTTTG 
    GTCAAGGGAA ACGAAGGATG AATGCTCGAA CAAGCATGGC TCAGCGAGAA 
    GATGTTATCC GTAGAACCGT CTACGTCTCT GATCTCGATC AACAGGTCAC 
    TGAAGAGCAG CTTGCTGGTT TGTTTGTGAG CTGTGGACAG GTTGTTGACT 
    GTCGCATATG CGGTGACCCA AACTCGGTCC TTCGGTTTGC ATTCATAGAG 
    TTCACTGATG AAGAGGGTGC GATGACTGCT CTAAATTTAT CGGGGACTAT 
    GTTGGGATTC TATCCTGTGA AAGTTTTACC ATCCAAAACA GCTATAGCAC 
    CGGTTAACCC GACATTTTTG CCTAGGACTG AAGATGAGAG TGAGATGTGT 
    GCAAGAACTA TCTACTGTAC TAACATAGAC AAGAAGGTGA CTCAATCAGA 
    CGTGAAGATC TTTTTTGAGT ACTTCTGCGG AGAGGTTTAT CGCCTGAGGC 
    TGCTTGGAGA TTATCAACAC TCGACTCGTA TTGCTTTTGT AGAGTTCGTA 
    ATGGCGGAAA GCGCAATAGC TGCTCTCAAC TGCAGTGGAG TTGTTCTTGG 
    TTCTTTACCT ATAAGGGTGA GTCCTTCAAA GACGCCTGTT CGTCCGAGAT 
    CACCGAGGCA TCCAATGCAT TGATCTTAGC TTTACAGGTT TTCACATATC 
    TCATGTCTCC GCAATATATA TATCGCTGTG TCGTCTTAAA AACAGCATTA 
    CACAGACATG TAAAGATGTT TGTCTGCATC TCTCATCTCT TGTTTTCGAA 
    ATGTAACTCT GGGATCTGAT GATGCTTCTT TCTTCTTCCT TTACCTGAGA 
    ATCTTTTGGG TAAAAAAAAC CTCGTAGAGA GTTTTTATTT ATCTCTTAAA 
    AAGAAAAGAG CTT

    Gene models with high sequence identity

    1. AT1G32790.1 [+] show detail - CTC-interacting domain 11
      E-value: 0; Score: 99.79

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 13.857
    ProfileScan RNA recognition motif, RNP-1 11.213
    HMMPfam RNA recognition motif, RNP-1 3.1e-12
    HMMPfam RNA recognition motif, RNP-1 1.4e-07
    HMMSmart RNA recognition motif, RNP-1 5.6e-14
    HMMSmart RNA recognition motif, RNP-1 2.4e-10
    HMMPanther RNA-BINDING PROTEIN 2.9e-16
    superfamily RNA-binding domain, RBD 3.3e-17
    superfamily RNA-binding domain, RBD 6.6e-14
    Gene3D Nucleotide-binding, alpha-beta plait 2.6e-14
    Gene3D Nucleotide-binding, alpha-beta plait 4.9e-10

    See the detailed result >

    AT1G32790.1

    Model type
    Protein coding
    Short Description
    CTC-interacting domain 11
    Curator Summary
    RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.
    Computational Description
    CTC-interacting domain 11 (CID11); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 (TAIR:AT4G10610.1); Has 4154 Blast hits to 3448 proteins in 292 species: Archae - 0; Bacteria - 29; Metazoa - 2530; Fungi - 406; Plants - 814; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR