F20922

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20922

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20922

Determination of introduced cDNA(s)

  • RAFL09-32-N13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-32-N13 - Resource: pda05960

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-32-N13 - full reading 
    AACCGCACAA ACAAAATTTC AGCTCCTCCA TATCCATCAA GAAAGATCAA 
    GAATCAAGAA CTAATCAATA TCGATCGATC CGTTAAAAAA AAATGGATAT 
    GATTCCCCAA TTGATGGAAG GCTCTTCAGC TTACGGAGGT GTCACAAACC 
    TCAACATCAT CTCAAACAAC TCCTCCTCCG TCACCGGAGC CACCGGAGGT 
    GAAGCAACGC AACCACTGTC TTCCTCCTCC TCACCATCGG CGAACTCAAG 
    CCGTTACGAG AACCAGAAGA GGAGAGACTG GAACACGTTC GGACAGTACT 
    TAAGGAACCA TCGGCCACCG CTTTCGCTTT CCCGATGCAG TGGAGCTCAC 
    GTGCTCGAGT TCCTCCGTTA CTTGGACCAG TTCGGTAAGA CAAAAGTCCA 
    CACGAACATT TGTCACTTCT ATGGCCATCC TAATCCTCCG GCACCGTGTC 
    CGTGTCCTCT CCGACAAGCT TGGGGAAGTC TTGACGCTCT TATCGGTCGT 
    CTTCGAGCTG CCTTTGAGGA AAACGGAGGC AAGCCTGAGA CGAATCCTTT 
    TGGAGCTCGT GCCGTTAGGC TTTATCTAAG GGAAGTTAGA GATATGCAGA 
    GTAAAGCTAG AGGTGTTAGC TACGAGAAGA AGAAGCGAAA GCGTCCTCTT 
    CCTTCGTCGT CGACTTCTTC TTCCTCCGCC GTAGCTAGCC ACCAGCAATT 
    TCAAATGCTA CCGGGTACTA GTTCTACTAC TCAATTAAAG TTTGAGAAGT 
    AAGTAATTAT ATAATTAAGA GAAATGGAGT ATTTTATGTA ATCTGAAATG 
    TGATTTGGTC TCTTTCTTAT ATGTTGATTT TAATTTTAGG TTATGTGGTT 
    CAGTTTTAGT TACTAGTGTA TGCTGGGGGG AGGAAGGTAG GGTTTTCAAT 
    TTTATTTATA TCTAATAAAA GAGAAATTCA CATGT

    Gene models with high sequence identity

    1. AT2G31160.1 [+] show detail - Protein of unknown function (DUF640)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G31160.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF640)
    Computational Description
    LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR