F20934

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20934

Determination of introduced cDNA(s)

  • RAFL09-11-F14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-F14 - Resource: pda07968

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-11-F14 - full reading 
    GTTTGCTTTA CCCTTATTTG GCCATTCCTG TCTTCCACTT TGTCATCTTT 
    TCCCTTTCTG ATGGGATCCG CCGCCGAACT CACGGAGCCC ACCACCGGGA 
    CCGAGAAGCT TCACCAGCCA ATAGAAGTTG AAGAAGATGA CGAACAAATT 
    GTTGATTTGG AGAGGAAAAC ATTCCGTCAT GGAAAGGGAC ACGATACTAG 
    TGTGGACAGT AGTACAATCA CCAACACCAG CTCGTCGTCG TCTTCTAGCT 
    TTTCCGGTGA TGGTGGAACG GAAGAGACCC CCGATTTCCA CAGCAACGGC 
    GATGGAGAAC ATACCGATTT AGTAAATTTG GAGGTCCCGG AGCTAGAAAC 
    TGAAATCGTA TTTCACCAAG AGCATGACGA CGGGAAGAAT TGCATCGTCT 
    TCTTCGACGG AGAACAAGGT TCTGAGTCAG CTGGTGCCAT ACCTGATGCT 
    CATGAGGAGT CTCAAACTGC TGACTTGAAT GGGGAGCAAA CGCAGTTAGA 
    ACCTGAAAAC GGTTCAACTT CTGAGGATAA CGAAAGATCT CGTGAAATTG 
    AAGAAGTACT AGATGGTGAT GTCTCTAAAG ACTTGGATGC TGTTGATCCA 
    CTCGCTGGTG AGGTGATAGA GGAGGAGGTG GACTTCGAAG ATGTTGAATA 
    TCATGATGTG GAGAATATGA TGGATAAGCA AGAGACACAT GATTTGTACT 
    GTCCAAACTG CGATTCTTGC ATCACCAAAA AGGTTATCCT CAAAAGAAGG 
    AAACGGAAGA TCCGTCGTCA TGAGCTGGGA GATTCAAAGC GGCCTCATTT 
    GACTGAGCCT CTTTTTCATT CGGAAGACAA TTTGCCATCT CTAGATGGCG 
    GTGAAAACTC TGCAAATGAG TCATTTGTCT TCAAGTGCTT GTCATGCTTT 
    ACCATATTTA TTCCCAAAGG GGTGAGTTCA AAGCCGATTC CTCCCCGTCA 
    AGGAGTTGAG GGGTTAAAGA TTCAGCCAAA CCCTCAAGTG GAAGCTACAG 
    GCGATTCCAA TTGGTTCAGT TCAATATTTG GCCTCAACAA AAAGGAATCA 
    GCTATTCAGC AAGGTGGGGC ATCATCTAGT GTCTTGGAAG CTAATCCGCC 
    ACCACGTGAG TCCATTGTCC CAGTAGTTAA TCCATCGCGT GGTAACCTAA 
    GTCCTATGCG AAAGGATACG ACAGGCTCAG CCGTTGTTCA GCCTGATGCA 
    GCCACTTCGA TTCAAGTTGC AAAATCAAAC GATACAAGCG AAATTGTAAA 
    CAATGGAGCT ATTGTTGGAG ACGGGCAAAA GTTTCTGGCT CCTATGGTGG 
    AGGAGCAAAC ACAGCAAAAG ATTGACAATG ATGATTCTAG TACAGCAGAC 
    GGGAATCACA CGTCAGACAA AGGACGTCTC TCCCCAATTC AACCATCTCA 
    TGGCATGAGT ATACTAAACA CAGTGACTAA CGGACCCGAC GGATTGAAAG 
    TAGAAACTAC AATTCATGAA GAAGGTGCCC CTCTTCTGTT TGAAGGAAAA 
    GACACTCCTG ACACAAGCAC GGCAGATTTT GGTCTGACCA AAGTAACAGG 
    TGTGATGGAC ACAGGTGACA GAGGAGTTAT TACCGGTCCA GCAAATCCTG 
    AAATTGATAT TTCAGCAGGG AATTTGCTGG AAGAAGGGTC TCTAAGGGAA 
    CCGTTAATGA GACGAGTTGT TGTTCAAGGA CGTAAACTGG AAATCTTGAA 
    AAGCATTGTC TACGGAGGTC TACTAGAAGC CATCACAAGC CTTGGTGTTA 
    TTTCATCTGC CGCTGGTTCT GGTGCTTCAA TGTTGAATAT TCTGGTCTTG 
    GGGCTTGCAA ACTTGCTTGG CGGGCTTATT CTTATTATTC ATAATCTCCA 
    AGAACTTAGA GAGGAGGAAC CCATAAGAAC AACAACAGAA GATAACCAGA 
    CTAACGGTAG AGAAGAAGAA GAAGGTCGGT ATAAGCGACT CCTTGGACGA 
    AGAGAAAATT TCACACTTCA CGCAACAGTC GCAATCTTAT CCTTCATAAT 
    CACCGGAATA CTCCCTCCTG TAGTCTACTA TTTCTCATTC AGTGAAAAAC 
    ACAACAAAGA CTACAAAGTT GCTTCAGTTT TCGGGGCATC TCTATTCTGC 
    ATCGTCTTGC TCGCCATAGC CAAAGCTCAT GTGAGGTACC CGAGAGGCAG 
    CTACCTGAAG AGCATTCTGT ACTACGGGTC AATTGCTGTA TCGGTGTCGG 
    GGATTTCTTA TGTGGTTGGT AACTTTCTGG AACAGTTGCT TGAGAAGCAT 
    GGATGGTCTG ATGGATCGGA AACACCTGTG GGACAGATGA TGCTTTCATC 
    ACTTATGGGA AGAAAAGCCG GCTTTGGATA CTCATCATCG TACTGAAACT 
    GAATCTTGCC TGGAGAATGA TCCAAACTGA AACTTGCTGC TTTTCTCTTT 
    TACTCTGCTT TTGTGAGCTC TCGTTCCAAA TCTTTGTTGT CGGCAAATCT 
    TTGTTGTGAC TTGTGAGTGT AGAAGAAAGT CGTTTCCACT TGTAGAATAA 
    ACTAAAATAA GCATAACATA ATAATGATGG AAGATCTGTG CCTTTTAAT

    Gene models with high sequence identity

    1. AT4G27870.1 [+] show detail - Vacuolar iron transporter (VIT) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G27870.1

    Model type
    Protein coding
    Short Description
    Vacuolar iron transporter (VIT) family protein
    Computational Description
    Vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: vacuolar iron transporter (VIT) family protein (TAIR:AT4G27860.2); Has 285 Blast hits to 248 proteins in 70 species: Archae - 2; Bacteria - 30; Metazoa - 59; Fungi - 10; Plants - 112; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR