F20936

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20936

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20936

Determination of introduced cDNA(s)

  • RAFL09-65-L24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-65-L24 - Resource: pda08624

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-65-L24 - full reading 
    AATCAAATCC AGTTCATCAG AGATCAAAGA TGGCTATTGC ACGAACTGGA 
    GTTTATGTTG ATGATTACCT TGAGTATGCA AGCACTTTCC CTGCAGAGCT 
    ACAAAGATTA CTAAACACAG TTCGCGAACT AGACGAGAGA TCTCAATCGC 
    TTATAAATCA GACAAGACAG CAAACTAAGT ATTGCTTAGG GCTTGCTTCA 
    CAGAGTTCTA AAAAGGGTAA TGGTAATCAT TACAATAATG GTGGTCTTGA 
    TGAAGAGGAA ACGATTGAGA AAATGCGTAA AGAGATTGAG TCTAGTCAGG 
    AAAATGCGTT AAGTTTGTGT ACCGAGAAGG TTTTATTGGC CCGACAAGCG 
    TATGATCTTA TAGATAGTCA TGTAAAACGA CTTGATGAAG ATCTGAATAA 
    TTTTGCAGAA GATTTAAAGC AAGAGGGAAA AATTCCACCA GACGAGCCCT 
    CTGTTCTTCC TCCACTACCT ATAGTTCCTA AAGCGGAAAA GCGTAAGTCC 
    TTCTATGGCA CACCTCAGCC CAAGAAGATT GATTATAGAG ATAGAGACTG 
    GGATCGTGAC AGGGATTTTG AGCTCATGCC TCCTCCAGGA AGCAATCGGA 
    AAGACCTTAT GCCAATTGAA GAGCAGCCAA TCGATCCAAA CGAACCAACT 
    TACTGTGTCT GCCATCAGGT GTCCTTTGGA GACATGATTG CCTGTGACAA 
    TGAGAATGTG AGCCTGCTCT CCCAGCATCT TATTATTTAT TTTTTAATGT 
    ATAGCTGTTA TGATGAAACC TTTTGTTCCT GTTTCGACAG TGCCAAGGAG 
    GTGAATGGTT TCACTATACA TGCGTTGGCC TCACACCTGA GACCAGATTC 
    AAAGGGAAAT GGTACTGCCC CACCTGCAGA CTCCTCCCAC AGTCACACTA 
    ATATCATTTG TACCTGTGAG AAGGTATTGC TTTACTATCA TCAGAACTAA 
    GCTCTCCTCC TGCAATTTCC ATGCATTCTG TAGCTAATAT AATACGTATG 
    GAGATTTGCA CGTACTTATG ATATTAATTC TCATAGGTGC CACTGGCATC 
    TTCTTTGGCA CCTTCCCTTC ATGACCAATG CCACCAAACT CATCTTTCTT 
    GTTACCCAAC ATCTAGCAAG TGCAAGTAGA AGCAAACTTT AGATGGAGAA 
    ATCATCATGT TTTGTAAACC TCGGGTTAAT TCGTGGAGCA TATATTTTGT 
    ATATCAATTG TATTTGGGTA TTGGTGGGCA TTTTCCGTTT TATTCTACTA 
    GTATCGATAT TTACATCTGC TTCTTTCTTT CTTTTTTCCC CTCAAACCAT 
    GAGCCTTTGT ATTGATCAAA TGACATGTAC AAAGGTTTTG TTCATCAGAA 
    GGAATTTCAC T

    Gene models with high sequence identity

    1. AT1G54390.1 [+] show detail - PHD finger protein-related
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2e-12
    HMMPanther ING-RELATED 7.2e-214
    HMMPanther INHIBITOR OF GROWTH 7.2e-214
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G54390.1

    Model type
    Protein coding
    Short Description
    PHD finger protein-related
    Curator Summary
    ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    INHIBITOR OF GROWTH 2 (ING2); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 1029 Blast hits to 893 proteins in 166 species: Archae - 2; Bacteria - 0; Metazoa - 705; Fungi - 173; Plants - 97; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR