F20944

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20944

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20944

Determination of introduced cDNA(s)

  • RAFL06-74-P05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-P05 - Resource: pda03535

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-P05 - full reading 
    ATCTATCGCA AAACTCTCCC GTCGTCACCA TTCGATTACG GGAGTGTAAT 
    GGCTCTTATA CAATTTGGAA GTTCATGTGT TGCTCAATGG GGGATTCTTC 
    GTCCTCGGTT TGCTGTTAAA GCTTTTTATC CAAGCAGATT GGAGTCTCAC 
    CAAGACAATT GCATCAGCCA AATAAATTGT CTGGGAGCTT CAAGGTCGAG 
    TATGTTTGCA CAGGGCTCTT TACCCTTCTT GTCATTGACG GGAGTATCTC 
    CTAATACACA TTCTCGTAGA GGAGCTCGCT TCACTGTTAG AGCTGATACT 
    GATTTCTATT CTGTCCTTGG AGTCTCGAAA AATGCAACCA AAGCTGAGAT 
    TAAAAGCGCT TATCGGAAGC TCGCTAGGAG TTATCATCCA GATGTGAACA 
    AGGATGCTGG GGCAGAAGAT AAATTTAAAG AAATAAGTAA TGCATATGAG 
    ATCTTATCAG ATGATGAGAA AAGATCTCTA TACGACAGAT ATGGCGAGGC 
    AGGAGTTAAA GGCGCTGGAA TGGGAGGCAT GGGGGATTAT AGTAATCCGT 
    TTGATCTATT TGAGTCATTA TTCGAAGGAA TGGGTGGGAT GGGAGGAATG 
    GGCGGTGGAA TGGGTAGTAG AGGTTCAAGG AGCAGAGCTA TCGATGGTGA 
    AGATGAGTAT TACTCACTAA TCTTGAATTT CAAAGAAGCG GTTTTCGGTA 
    TTGAGAAAGA AATTGAGATA TCTCGGTTAG AGAGCTGTGG GACTTGCAAT 
    GGTTCTGGAG CTAAAGCGGG AACCAAACCA ACCAAATGCA AAACATGTGG 
    CGGGCAAGGA CAGGTGGTAG CATCAACGAG GACACCACTC GGTGTATTCC 
    AACAAGTGAT GACTTGCTCT CCGTGTAACG GAACTGGGGA GATATCAAAA 
    CCGTGTGGTG CATGCTCAGG AGATGGACGT GTGAGAAGGA CAAAGCGGAT 
    TAGTCTTAAA GTTCCTGCGG GTGTGGATTC TGGAAGTAGG TTAAGAGTGA 
    GGGGAGAAGG GAATGCAGGA AAGAGAGGTG GATCACCGGG AGATCTCTTT 
    GCGGTTATTG AGGTTATTCC AGATCCGGTT TTGAAGCGTG ATGATACAAA 
    TATACTTTAT ACGTGTAAGA TATCGTATGT AGATGCCATA TTGGGGACGA 
    CTTTGAAGGT ACCAACAGTG GATGGAGAGG TGGATTTGAA AGTACCGGCA 
    GGGACACAAC CAAGCACGAC ATTGGTGATG GCTAAAAAAG GAGTTCCGGT 
    TTTGAATAAG AGCAAGATGA GAGGTGATCA GTTAGTGAGA GTGCAAGTTG 
    AGATTCCTAA GAGATTGAGT AAAGAAGAGA AGATGCTTGT TGAGGAGCTG 
    GCTGATATGA GCAAGAACAA GGTAGCTAAT AGCAGGAGAT AAACCAACAC 
    ACAATATTAG TGAAATGTGA TGTTATATAG ATTCATCATT CTCTGCTTGT 
    CGTCTTTCTA ATGGTTCGTC TAACGATGGA GAAGATAAGC AAGAGGCAAA 
    AGAAAGACTT ATTAGGTGAG AGGAAAATTT GAAGAACTCT GGTTTTGGGT 
    TTTCCTCTTC AATTTTTGTG TTTTACTTTT AAAACAAATT TTATGGATTT 
    ATCAGGATTC AGGGTAGGTC TTGATTGTAT TGTACTGCTA TTTTTATACA 
    TTTGAATCTT CTTTTCTTAT TAATGAAAAT TTTATCAAAC G

    Gene models with high sequence identity

    1. AT4G39960.1 [+] show detail - Molecular chaperone Hsp40/DnaJ family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heat shock protein DnaJ, N-terminal 6e-35
    superfamily HSP40/DnaJ peptide-binding 4.9e-22
    superfamily Heat shock protein DnaJ, cysteine-rich domain 2e-17
    superfamily HSP40/DnaJ peptide-binding 3.8e-17
    ProfileScan Heat shock protein DnaJ, N-terminal 23.826
    ProfileScan Heat shock protein DnaJ, cysteine-rich domain 24.59
    HMMTigr Chaperone DnaJ 1e-204
    Gene3D Heat shock protein DnaJ, N-terminal 8.3e-27
    Gene3D Heat shock protein DnaJ, cysteine-rich domain 1.3e-16
    Gene3D no description 3.3e-22
    PatternScan Heat shock protein DnaJ, conserved site 0
    HMMSmart Heat shock protein DnaJ, N-terminal 4.2e-30
    HMMPanther CHAPERONE PROTEIN DNAJ 5.3e-170
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 5.3e-170
    FPrintScan Heat shock protein DnaJ 6.4e-49
    FPrintScan Heat shock protein DnaJ 6.4e-49
    FPrintScan Heat shock protein DnaJ 6.4e-49
    FPrintScan Heat shock protein DnaJ 6.4e-49
    FPrintScan Heat shock protein DnaJ 6.4e-49
    FPrintScan Heat shock protein DnaJ 6.4e-49
    FPrintScan Heat shock protein DnaJ 6.4e-49
    FPrintScan Heat shock protein DnaJ 6.4e-49
    HAMAP Chaperone DnaJ 33.264
    HMMPfam Chaperone DnaJ, C-terminal 1.4e-27
    HMMPfam Heat shock protein DnaJ, N-terminal 4.1e-27
    HMMPfam Heat shock protein DnaJ, cysteine-rich domain 2.1e-18

    See the detailed result >

    AT4G39960.1

    Model type
    Protein coding
    Short Description
    Molecular chaperone Hsp40/DnaJ family protein
    Computational Description
    Molecular chaperone Hsp40/DnaJ family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G22360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR