F21022

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21022

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21022

Determination of introduced cDNA(s)

  • RAFL09-18-M24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-18-M24 - Resource: pda05475

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-18-M24 - full reading 
    AAAAAAGGTT GAGTAGAGAT TAGGCAAAAA CAAAATTCTC GATCCCCAAA 
    TTTCGAAAAC TTGTTCTTAG GGCGATTCTT CTCTTTGGTC ATTTGGCGAA 
    TTTGATTTAT ATCCATCGGT GATCGGATTT TTTTCAGTCT TCTCCGTCTC 
    GTCGTTACCG GCGTTTGATC GGATCATCGT TTTGTTTCAG GCGAAATATG 
    GTGGTGATCT CCCTGAAGAT TTTGAATTCA AAATTTCTTC GGTTGCTTCC 
    TCTTGACTTT ATCGCGATTT CGATTACGTG TAGACTTTCT TCTTGGCTTT 
    GTCTTCGAAT CAATTAGGAT TGTGAATAAT CGTGTCTGTG TATATAAGAC 
    TGGTGATTGA TTATTAGGGC ATCGGTTGGC AGGAGAATAG ATTGTTTTTT 
    TTTTTTGGTG TGTGTTGGAT CTTTAGATCT TTGACTGAGG AATATGTATA 
    TCAAAGAACT GACGGAAACG GATGAGGAGA AGAGGGAGAG ATCGGTTGAG 
    GATAACGTTG ATGATGGAGA TAAGGCGGTA TTGGTGAGCA GAGGAAACGT 
    GATTGTGTTG ACTACAAAGA GGGCACTCGT TGGTGTTGGT GCTCGTGCTT 
    TGTTTTATCC TACTCTGGTT TACAACGTTG TTAGGAATAA GCTCGAATCT 
    GAGTTTCGCT GGTGGGATCG CGTGGCTGAG TTTATATTAC TGGGAGCTGT 
    TCCATTTCCA TCTGATGTTC CACAGCTGAA AGAGCTCGGT GTTTGTGGAG 
    TGATCACTCT GAATGAGCCA TATGAAACTT TGGTTCCATC GTCTCTCTAC 
    AAATCTTACT GCATTGACCA CCTGGTGATT GCTACAAGAG ATTATTGTTT 
    TGCTCCTTCC ATGGAAGCAA TATGCCAAGC TGTAGAATTT ATCCATAGAA 
    ATGCTTCGCT TGGAAAGACG ACTTATGTTC ACTGCAAAGC GGGTCGGGGT 
    CGCAGCACAA CTATTGTCAT ATGCTACTTG GTTCAACACA AAAACATGAC 
    ACCTGAAGCA GCATATTCCT ACGTGAGATC AATCAGGCCC AGGGTTCTTT 
    TAGCAGCAGC CCAATGGAAG GCCGTTGTTG AGTACTACCA TGTCAAGGTG 
    CTGAATACTC AGAGTTGCTT AACTGATGCA ACTTCAGCTT TGATCCCGAG 
    AAATGTAAGC AGGTTTGTTC TGGGAATGTA GTGGTGTTTG ATGATGGGTC 
    AATGGTTGTA GTCACCCACT CGGATCTAGA GGGCTATAAT GATGATGACT 
    CACGGTCACG GAGGTCAGTG AAAGTTAATG GGAATGAGCT ATGGGCGGCA 
    GCTGCAGATC TGAGCATGGT GTACAGGGTG AAAGTGGTGG GGCAGGCTGC 
    GATGGCGAGG ATATCGTGTC TGTGGCTGGG CTTGCGTGAG GACCAAAAGC 
    TTTCTGGGAA AAATCTTTCC ATGGGAGGCA TAAGCGTCGA CATTTCTGTC 
    TACTGATGAT GATGGCGAAG AATGAATGCA GGTGAGTCTG CTGGCGAGTG 
    AGTGAATATA CCTTATTCAC TGTTTCTCCC CCAGTAGAAA AAAAAAGTCT 
    CTAAATAAAA AAATGGGTCA AATTAGGTAT AGAAGTAAGC AAGGGTTTGT 
    AAATTTGAAA AAAAAAAAAC TTGGTTTTGT CGTCTGGGTA TTGTAATTAA 
    ATACTACCTT GTCCCTCATT TGCCTTTGAT GAGGATAAAC ATGAATTAGT 
    CTCC

    Gene models with high sequence identity

    1. AT2G35680.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
      E-value: 0; Score: 99.82

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Dual specificity phosphatase, subgroup, catalytic domain 17.485
    ProfileScan Dual-specific/protein-tyrosine phosphatase, conserved region 14.202
    Gene3D no description 1.3e-30
    PatternScan Protein-tyrosine phosphatase, active site 0
    HMMSmart Dual specificity phosphatase, subgroup, catalytic domain 2.4e-07
    superfamily (Phosphotyrosine protein) phosphatases II 2.9e-36
    HMMPanther PTEN-RELATED PHOSPHATASE (PLIP) 6e-127
    HMMPanther DUAL SPECIFICITY PROTEIN PHOSPHATASE 6e-127
    HMMPanther PTEN-RELATED PHOSPHATASE (PLIP) 4.8e-69
    HMMPanther DUAL SPECIFICITY PROTEIN PHOSPHATASE 4.8e-69
    HMMPfam Dual specificity phosphatase, catalytic domain 3.8e-18

    See the detailed result >

    AT2G35680.1

    Model type
    Protein coding
    Short Description
    Phosphotyrosine protein phosphatases superfamily protein
    Computational Description
    Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT5G56610.1); Has 1976 Blast hits to 1976 proteins in 288 species: Archae - 41; Bacteria - 150; Metazoa - 1097; Fungi - 157; Plants - 204; Viruses - 23; Other Eukaryotes - 304 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR