F21139

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21139

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • variegated (PATO:0000335)
    (Rosette leaf::Color::variegated)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21139

Determination of introduced cDNA(s)

  • RAFL04-15-H06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-H06 - Resource: pda00503

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-H06 - full reading 
    GTTTCATCTG TTGTTCCCTG TGACCATGGC TACTCCACTC TCAATCTCAT 
    CAAATCCTCT CACCTCCCGC CATTGTTACC GTCTCCACTT ATCTTCTACT 
    TCATTCAAGG GAAATGTAAG TGTTTTGGGG GCAAACCCAA GTCAGATTCT 
    ATCTCTGAAA CTCAACCAAA CCCTTAAAAC GAGAAACCAA CAGCAATTTG 
    CGAGACCCCT TGTTGTGGTT AGCCAAACGG CGGCTACGTC GTCGGCAGTT 
    GTAGCTCCGG AGAGATTCCG TTTGGATAAT CTTGGACCAC AGCCAGGTTC 
    GAGGAAGAAG CAGAAGAGAA AAGGTAGAGG TATCTCTGCA GGACAAGGAG 
    CAAGTTGTGG TTTTGGTATG AGAGGTCAGA AATCAAGATC GGGTCCTGGG 
    ATTATGAGAG GCTTTGAAGG TGGTCAAACT GCTCTTTATC GTCGTCTTCC 
    CAAACTTAGA GGAATCGCTG GAGGTATGCG TTCAGGATTA CCTAAATACT 
    TACCGGTTAA TATCAAAGAC ATAGAAACAG CTGGGTTTCA AGAGGGAGAT 
    GAAGTGTCAT TGGAGACATT GAAGCAAAAG GGTTTGATTA ATCCTTCAGG 
    GAGAGAAAGG AAACTCCCTC TTAAGATTCT GGGTACAGGA GAACTAAGCA 
    TGAAGCTCAC CTTCAAAGCT CGTGCCTTCT CAACACAAGC AAAAGAGAAG 
    CTTGAAGCTT CAGGTTGTAC ACTCACTGTG TTGCCGGGAA GAAAGAAATG 
    GGTTAAGCCA TCTGTTGCAA AGAACCAAGC ACGAGCAGAT GAATACTTTG 
    CCAAGAAGAG AGCTGCAGCA GCAGAAGCAG CAACTTCAGA GCCAGCAGCC 
    TCTGCTTAAA TTACTTCAGT TTCAAGCTCT TTTTAGTGTT GTAAAGCTGC 
    AGAGAAGATA ATTGTCTATG ACAAATGTTA ATTACAATTC CTTTGTCTTT 
    TTGTATGGTG AAGAGATTTA CATTTTGTTG TTTGAAGAGT CATTATCAAA 
    AAGATATTTA AACGGAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G25920.1 [+] show detail - ribosomal protein L15
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L18e/L15 6.3e-23
    superfamily Ribosomal protein L18e/L15 6.9e-27
    HMMPanther 50S RIBOSOMAL PROTEIN L15 7.6e-212
    HMMPanther Ribosomal protein L15, bacterial-type 7.6e-212
    HMMTigr Ribosomal protein L15, bacterial-type 1.6e-44
    PatternScan Ribosomal protein L15, conserved site 0
    Gene3D no description 3.7e-05

    See the detailed result >

    AT3G25920.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L15
    Curator Summary
    encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex
    Computational Description
    ribosomal protein L15 (RPL15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G64670.1); Has 7744 Blast hits to 7744 proteins in 2658 species: Archae - 15; Bacteria - 5386; Metazoa - 72; Fungi - 86; Plants - 90; Viruses - 0; Other Eukaryotes - 2095 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR