F21223

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21223

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F21223

Determination of introduced cDNA(s)

  • RAFL09-43-M13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-M13 - Resource: pda08386

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-43-M13 - full reading 
    GAGCAGATAT TTACCCAATC AGGGATTCAG GAAGAGAAGC AGAGAAAGAA 
    ATGGAGATAA CACTGAACAG TGGCTTCAAG ATGCCGATCG TCGGCTTAGG 
    AGTATGGAGA ATGGAGAAGG AAGGGATTCG AGACCTTATC CTCAATGCCA 
    TCAAGATCGG CTATCGCCAT CTCGACTGTG CTGCTGATTA TAGGAATGAG 
    ACCGAAGTTG GTGATGCTCT TACAGAAGCA TTCAAGACTG GTCTGGTTAA 
    GAGGGAGGAT CTCTTCATTA CAACCAAGCT ATGGAATTCA GACCATGGCC 
    ATGTCATTGA GGCCTGCAAA GACAGTCTCA AGAAACTTCA ACTTGATTAC 
    CTCGATCTCT TCCTCGTTCA TTTTCCCGTA GCAACGAAAC ACACCGGAGT 
    AGGGACAACC GATAGTGCTT TGGGCGATGA CGGGGTATTG GACATAGACA 
    CGACCATCTC TCTGGAAACT ACATGGCACG ACATGGAAAA GCTTGTTTCT 
    ATGGGTTTAG TCCGCAGCAT TGGAATCAGT AACTATGATG TCTTTCTAAC 
    GAGAGATTGC TTGGCTTACT CCAAGATCAA ACCTGCTGTG AATCAGATCG 
    AGACACATCC TTACTTCCAA CGTGATTCTC TTGTCAAATT CTGCCAGAAA 
    CATGGTATCT GTGTCACTGC TCATACTCCT CTCGGAGGTG CCACAGCCAA 
    TGCCGAGTGG TTTGGCACCG TGTCATGCCT GGATGATCCA GTTCTCAAAG 
    ATGTGGCCGA GAAGTACAAA AAGACAGTGG CACAAGTTGT CCTGAGGTGG 
    GGAATCCAGA GAAAAACGGT GGTGATACCA AAGACATCAA AGCCTGCGAG 
    ATTGGAAGAG AACTTTCAGG TTTTCGACTT CGAACTATCG AAAGAGGACA 
    TGGAAGTGAT CAAAAGCATG GAGAGGAAAT ACCGCACGAA CCAACCAGCC 
    AAGTTTTGGA ACATTGATCT CTACGCTTGA TCACACTCTC TCTATCTACA 
    TGAATAAATG AAGCTTAAGA AGATAAACAA CGAGAAGAAG CCATAGCTTT 
    ACCTGAAACA TTCTCAAATG TTTGTGAGCC TATCTTTCAT ACATAAACTC 
    ATGTTGTTAA ACAGATTATG ATTTCTTAAG TACTACAATA TCACACATTG 
    ATGGAAAGT

    Gene models with high sequence identity

    1. AT2G21250.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Aldo/keto reductase 1.8e-95
    HMMPfam Aldo/keto reductase 1.2e-54
    FPrintScan Aldo/keto reductase subgroup 3.6e-55
    FPrintScan Aldo/keto reductase subgroup 3.6e-55
    FPrintScan Aldo/keto reductase subgroup 3.6e-55
    FPrintScan Aldo/keto reductase subgroup 3.6e-55
    FPrintScan Aldo/keto reductase subgroup 3.6e-55
    HMMPanther ALDO-KETO REDUCTASE 1.9e-103
    HMMPanther Aldo/keto reductase 1.9e-103
    PatternScan Aldo/keto reductase, conserved site 0
    PatternScan Aldo/keto reductase, conserved site 0
    PatternScan Aldo/keto reductase, conserved site 0
    Gene3D Aldo/keto reductase 4.2e-99

    See the detailed result >

    AT2G21250.1

    Model type
    Protein coding
    Short Description
    NAD(P)-linked oxidoreductase superfamily protein
    Computational Description
    NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT2G21260.1); Has 23237 Blast hits to 23200 proteins in 2399 species: Archae - 409; Bacteria - 15760; Metazoa - 2015; Fungi - 1895; Plants - 1372; Viruses - 0; Other Eukaryotes - 1786 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR