F21227

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21227

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21227

Determination of introduced cDNA(s)

  • RAFL04-12-K15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-12-K15 - Resource: pda00441

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-12-K15 - full reading 
    ACCACAGAGA AAACTTCGTC TCTCTTCTCT GCTTCGCCCT CTCATTTCCT 
    GTGAGATAAA GGCGGAGTCT CTCTCCAGTT ATTTTGCTCA TCCATCGATT 
    CTTAGAGTTC AAAATGGTTG ATCAAGTTCA GCACCCCACT ATTGCGCAGA 
    AAGCTGCCGG GCAGTTCATG CGTTCAAGTG TTTCCAAGGA CGTTCAAGTG 
    GGTTACCAGA GGCCTTCTAT GTATCAAAGA CATGCAACCT ACGGAAACTA 
    CTCCAATGCT GCATTTCAAT TTCCTCCGAC ATCCCGGATG TTGGCAACAA 
    CTGCTTCTCC CGTGTTTGTC CAAACCCCAG GAGAGAAGGG GTTCACTAAC 
    TTTGCCCTTG ACTTTCTGAT GGGTGGTGTT TCTGCTGCCG TCTCCAAGAC 
    TGCTGCTGCT CCTATTGAAC GTGTTAAGCT TTTGATCCAG AACCAGGATG 
    AGATGATTAA AGCTGGCAGG CTTTCTGAAC CCTACAAGGG TATTGGTGAC 
    TGTTTCGGCA GGACGATTAA GGATGAAGGT TTTGGTTCTC TATGGAGAGG 
    AAACACTGCC AATGTTATCC GTTATTTCCC CACTCAGGCC TTGAACTTTG 
    CCTTCAAAGA TTACTTCAAA AGACTTTTCA ACTTTAAGAA GGACAGAGAT 
    GGTTACTGGA AGTGGTTTGC TGGTAACTTG GCATCTGGAG GAGCAGCTGG 
    TGCCTCTTCC CTTCTGTTTG TGTACTCCCT TGACTATGCC CGTACCCGTC 
    TAGCTAATGA TGCCAAGGCT GCAAAGAAAG GAGGTGGTGG AAGACAGTTT 
    GATGGTCTTG TTGATGTCTA CAGAAAGACA CTTAAGACTG ATGGTATTGC 
    TGGTCTGTAC CGTGGATTCA ACATCTCATG TGTTGGTATC ATTGTCTACC 
    GTGGTCTGTA CTTTGGACTC TATGACTCTG TGAAGCCTGT TCTCCTCACT 
    GGTGACTTAC AGGACAGTTT CTTCGCTAGT TTCGCTCTTG GATGGGTTAT 
    TACCAATGGT GCGGGTCTTG CATCCTACCC CATTGACACT GTCCGCAGAA 
    GAATGATGAT GACGTCTGGT GAAGCTGTCA AGTACAAGAG TTCTTTGGAC 
    GCCTTCAAGC AGATCCTCAA GAATGAAGGA GCCAAGTCAC TCTTCAAGGG 
    AGCTGGTGCC AACATTCTGC GTGCTGTTGC AGGTGCTGGT GTGCTTTCCG 
    GTTACGACAA ATTGCAGCTG ATTGTCTTCG GTAAGAAGTA CGGATCAGGA 
    GGTGCCTAAG CATTGCTTCT TCCTCCTTTT TTCGATTTTA ATTGCGGTTT 
    TAAGGCCCGC AATAAACTGA GATGTTGATG AAATTTTTTT TGCTTAAGAC 
    TTAGGGAGGC ATGTGCCCTA AACCAAATTT TATATCGTTC TGACGCCAAC 
    TTTTTTTACT TATGGAATAA TTCATGTTTG AGACAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G08580.2 [+] show detail - ADP/ATP carrier 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mitochondrial substrate carrier 9e-81
    HMMPfam Mitochondrial substrate/solute carrier 5.3e-24
    HMMPfam Mitochondrial substrate/solute carrier 4.4e-21
    HMMPfam Mitochondrial substrate/solute carrier 1.3e-16
    HMMPanther ADP,ATP CARRIER PROTEIN 2.5e-186
    HMMPanther Mitochondrial substrate carrier 2.5e-186
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Mitochondrial carrier protein 2.9e-68
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    FPrintScan Adenine nucleotide translocator 1 2.2e-65
    ProfileScan Mitochondrial substrate/solute carrier 25.238
    ProfileScan Mitochondrial substrate/solute carrier 21.741
    ProfileScan Mitochondrial substrate/solute carrier 18.973

    See the detailed result >

    AT3G08580.2

    Model type
    Protein coding
    Short Description
    ADP/ATP carrier 1
    Curator Summary
    mitochondrial ADP/ATP carrier
    Computational Description
    ADP/ATP carrier 1 (AAC1); FUNCTIONS IN: binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 19858 Blast hits to 12534 proteins in 484 species: Archae - 0; Bacteria - 0; Metazoa - 8967; Fungi - 5060; Plants - 3882; Viruses - 0; Other Eukaryotes - 1949 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR