F21236

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21236

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21236

Determination of introduced cDNA(s)

  • RAFL09-49-B03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-B03 - Resource: pda06411

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-B03 - full reading 
    ACCTTTCGCT GTTTCCTCGT CAATTTCTTT GTTTGGTTGT TCTTTCTTCG 
    CATCCAAAGA TGAAGCTCGT CAGGTTTTTG ATGAAGTTAA ACAATGAAAC 
    TGTGTCTATC GAGCTGAAGA ATGGGACTGT GGTCCATGGA ACCATCACTG 
    GTGTTGATGT GAGCATGAAC ACTCACTTGA AGACAGTGAA GATGAGCCTG 
    AAGGGGAAAA ACCCAGTAAC ACTTGATCAT CTTAGCTTGA GGGGTAATAA 
    TATTCGCTAC TACATTCTTC CTGATAGCTT GAACCTCGAG ACTTTACTTG 
    TGGAAGACAC TCCTAGAGTT AAACCTAAGA AGCCTGTTGC TGGGAAAGCT 
    GTTGGACGCG GTCGCGGACG TGGCCGTGGG CGTGGTCGCG GCAGAGGTCG 
    TTAGATGTAG CAGCGCTCTG GAACATGTTG AAGGTTTGTG AGTTTAATTT 
    TTAGGAGAAT GTACGAGTTA TGTAACTAGC AACTCTGGCA AAGGAAAGAT 
    TTGATTGAGA AATAGTATGA TTGATGCTCT AGTAAGGAGT TACTTTGTAA 
    TGGAATTCCA TGGATAACAA GATTTGGCTT TACATGTTAT AAGAGCATCT 
    ACAAGG

    Gene models with high sequence identity

    1. AT3G07590.1 [+] show detail - Small nuclear ribonucleoprotein family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.2e-24
    superfamily Like-Sm ribonucleoprotein (LSM)-related domain 2.5e-23
    HMMSmart Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type 1.3e-16
    HMMPfam Like-Sm ribonucleoprotein (LSM) domain 3.2e-16
    HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 1.1e-67
    HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1.1e-67

    See the detailed result >

    AT3G07590.1

    Model type
    Protein coding
    Short Description
    Small nuclear ribonucleoprotein family protein
    Computational Description
    Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G02840.1); Has 1173 Blast hits to 1172 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 423; Fungi - 342; Plants - 215; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR