F21247

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21247

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21247

Determination of introduced cDNA(s)

  • RAFL09-19-I20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-I20 - Resource: pda05515

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-I20 - full reading 
    CTCCCCAGAA AAGAGAAATG AAGAGATACC AAAATCTAAA GGTAGGAGAA 
    GCTTTCTCCA AAAATCGTAT TTACCCATTT GCTTGCAATG AACTAAGCTC 
    CATATTGAAT CTTGCTTACT CTCTATCACC CAAAAATGTC AAAGCTTTGA 
    TCTTCCAAGA TACCCTCTCC GCTTTTCGTC TTCTTCCCGA CATCAATACA 
    TCAGCTGCTG TTTCAGCCGC TAACCTTCTC CTGAAGAGCG TGGAAGCGGT 
    GCTCCCCAAA CAGAAGAAGA ATTTAGCCAT TGTAGAATTC AAGCAGGCAA 
    AAGTAGCACT AAAGAGGCGT AGTAAGAACC GTGAGGAAGA AGATATAGAT 
    ATACCTTCAC TTCCACAAGA TATCCTTATT CACATCTTCA GTTTCCTCGA 
    GATATCGTCC TTAGTTTCCT CAGCTCAAGT GTCTCGCTCT TGGAACCAAG 
    CAACGCATGA GAACTCTCTG TGGCAATCAC AATTTGACCT TCACTTCAAT 
    CACAAAGTCT TGATTCGTAT GCAGTCCGAT ATTGACTGGA GAGAAGCCTT 
    TAAGAAAGCA TACATCGCGG CTAATTCATC GGAGGCATTG AGATCTGGCC 
    GGGGATACTG CAGTTACTGT GATTCTATTG TTTGGCACGA AAACTTGAGA 
    TGTCTGAACA AACAATGTCG GTTGAAATCA GGCAACAAGC CACTCGACCT 
    CATAACAACT CACCAGGTTG TCAACTATTT GCTGGGGATA GAGAGTTCTG 
    ATGATGAAAG CGAATCAGAC GATGAAGCCT TTCCTGGACG ACTATGGAAA 
    CTTTCTTACG TGCCTGATTA CTTGTAAATC ACTAAAGAGA AATATATGGC 
    CCTATATGGG CTTGTGGTAC CTCATTGGAC CATTTGGCCT TACTAAGAAT 
    GTTTGTGTAG TTTCAAGCCT ACTTGATTAG CTTTTTGTTT GCAGATACGT 
    ATGGTAATAT TGTGTTTTAT CTAAAAGAAG TTTCTACTTT TC

    Gene models with high sequence identity

    1. AT5G52880.1 [+] show detail - F-box family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CELL DIVISION CONTROL PROTEIN 4 0.0000025
    HMMPanther F-BOX AND WD40 DOMAIN PROTEIN 0.0000025
    Gene3D no description 0.00000031
    HMMSmart F-box domain, cyclin-like 0.00000012
    HMMPfam F-box domain, cyclin-like 0.0000000024
    superfamily F-box domain, Skp2-like 0.0000000000000068
    ProfileScan F-box domain, cyclin-like 12.544

    See the detailed result >

    AT5G52880.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR