F21437

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21437

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21437

Determination of introduced cDNA(s)

  • RAFL06-12-J07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-J07 - Resource: pda03115

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-12-J07 - full reading 
    GTGAAGTCTC TTATATATAA GTATCGAGAG AATTAGGGTT TTCTAGTCTA 
    GTGTTTCCGG GAGCAGCCTG AGCAGGAGGA AGAAGACGAA GAAGAAGAGG 
    AGCAGCTACT ACCATGGTTC TCAAGACGGA GCTTTGTCGT TTCAGTGGAC 
    AGAAGATTTA CCCAGGAAGA GGAATTAGGT TTATCCGATC TGATTCTCAG 
    GTTTTCTTGT TTCTTAACTC AAAATGTAAG AGGTACTTCC ATAACAAGTT 
    GAAGCCATCC AAGCTTGCAT GGACTGCCAT GTACAGAAAG CAACACAAGA 
    AGGATGCAGC ACAAGAGGCT GTGAAGAGAA GGAGACGTGC CACCAAGAAG 
    CCATACTCAA GGTCCATTGT TGGTGCTACC TTGGAAGTAA TTCAGAAGAA 
    GAGAGCTGAG AAGCCTGAAG TTCGTGATGC AGCCAGGGAA GCTGCTCTGC 
    GTGAGATCAA GGAAAGAATC AAAAAGACCA AAGATGAAAA GAAGGCTAAG 
    AAGGTGGAAT TTGCTTCTAA GCAACAGAAG GTCAAGGCTA ATTTCCCCAA 
    AGCTGCTGCT GCATCCAAGG GTCCTAAGGT GGGAGGTGGT GGTGGCAAAC 
    GCTGAAGAGC TTAAAGCCAT CTTTTCTCAC TCTGCGTCTT TTCTGCTAGT 
    AGCTACTTTT AGTAGTTGAT GTTCATTTCT GAATATTTGC AAAACATAAA 
    CCTTGTTATT TCGTTTTTGT CTCTCACTTT TGCTACTCTT ATAATATCAG 
    ACTTGAGAAT TTTGCTGCTT ATGAACTTTA TTTCACC

    Gene models with high sequence identity

    1. AT3G53020.1 [+] show detail - Ribosomal protein L24e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L24e 0
    HMMPfam Ribosomal protein L24e 5.4e-37
    Coil coiled-coil 0
    superfamily Glucocorticoid receptor-like (DNA-binding dom 1.6e-18
    HMMPanther 60S RIBOSOMAL PROTEIN L24 1.4e-75
    HMMPanther Ribosomal protein L24e 1.4e-75
    Gene3D Ribosomal protein L24e 1.7e-20
    HMMSmart TRASH 3.8e-07

    See the detailed result >

    AT3G53020.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L24e family protein
    Curator Summary
    RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.
    Computational Description
    SHORT VALVE1 (STV1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: auxin mediated signaling pathway, gynoecium development, translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: ribosomal protein L24 (TAIR:AT2G36620.1); Has 1463 Blast hits to 1456 proteins in 346 species: Archae - 110; Bacteria - 20; Metazoa - 460; Fungi - 300; Plants - 340; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR