F21521

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21521

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F21521

Determination of introduced cDNA(s)

  • RAFL09-72-H13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-72-H13 - Resource: pda06793

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-72-H13 - full reading 
    GTTTGTAGTA TAAATATCCT TCTCTTCGTC CCTCTCATCG CCTGTCTCTC 
    CTCTTCCTCT TCCCGTTCCA TTTATCCGCA AACGGAGCTT GTTTTCGGTG 
    CACCTGCTTC AGCCACTTCA AACTTGAACT GAGAAGGATG GGAAACGAAT 
    CATATGAAGA CGCCATCGAA GCTCTCAAGA AGCTTCTCAT TGAGAAGGAT 
    GATCTGAAGG ATGTAGCTGC GGCCAAGGTG AAGAAGATCA CGGCGGAGCT 
    TCAGGCAGCC TCGTCATCGG ACAGCAAATC TTTTGATCCC GTCGAACGAA 
    TTAAGGAAGG CTTCGTCACC TTCAAGAAGG AGAAATACGA GACCAATCCT 
    GCTTTGTATG GTGAGCTCGC CAAAGGTCAA AGCCCAAAGT ACATGGTGTT 
    TGCTTGTTCG GACTCACGAG TGTGCCCATC ACACGTACTA GACTTCCATC 
    CTGGAGATGC CTTCGTGGTT CGTAATATCG CCAATATGGT TCCTCCTTTT 
    GACAAGGTCA AATATGCAGG AGTTGGAGCC GCCATTGAAT ACGCTGTCTT 
    GCACCTTAAG GTGGAAAACA TTGTGGTGAT AGGGCACAGT GCATGTGGTG 
    GCATCAAGGG GCTTATGTCA TTTCCTCTTG ACGGAAACAA CTCTACTGAC 
    TTCATAGAGG ATTGGGTCAA AATCTGTTTA CCAGCAAAGT CAAAAGTTTT 
    GGCAGAAAGT GAAAGTTCAG CATTTGAAGA CCAATGTGGC CGATGCGAAA 
    GGGAGGCAGT GAATGTGTCA CTAGCAAACC TATTGACATA TCCATTTGTG 
    AGAGAAGGAG TTGTGAAAGG AACACTTGCT TTGAAGGGAG GCTACTATGA 
    CTTTGTTAAT GGCTCCTTTG AGCTTTGGGA GCTCCAGTTT GGAATTTCCC 
    CCGTTCATTC TATATGAACT AACACATCAC CATCACCATC GCTACCACCA 
    CCATCACAAA CATCATCATC GTCGTCATCA TCATGATCAG CATCTTCATA 
    TATAAATGTT TTACTCTTAT TTAATTGCTA CTTGTAATGG TATACATTTA 
    CTTGCGATGA GCTTCTTTTC CTTCATTATC CAGTTATAAA ATAAAT

    Gene models with high sequence identity

    1. AT5G14740.1 [+] show detail - carbonic anhydrase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Carbonic anhydrase 9.3e-68
    superfamily Carbonic anhydrase 1.1e-66
    Coil coiled-coil 0
    HMMPanther CARBONIC ANHYDRASE 1.2e-96
    HMMPanther Carbonic anhydrase 1.2e-96
    PatternScan Carbonic anhydrase, prokaryotic-like, conserved site 0
    PatternScan Carbonic anhydrase, prokaryotic-like, conserved site 0
    HMMPfam Carbonic anhydrase 1.9e-42

    See the detailed result >

    AT5G14740.1

    Model type
    Protein coding
    Short Description
    carbonic anhydrase 2
    Curator Summary
    Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
    Computational Description
    carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 5122 Blast hits to 5105 proteins in 1527 species: Archae - 36; Bacteria - 3955; Metazoa - 59; Fungi - 207; Plants - 361; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR