F21525

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21525

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21525

Determination of introduced cDNA(s)

  • RAFL09-24-I02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-24-I02 - Resource: pda05756

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-24-I02 - full reading 
    ATTCGTGTCG GAACTTTAGA TCCGATATTT ATAGAAAGCA ACCAAACTCC 
    GGCTCCGGTT ACTCGGGAGT TCAAGTTTTG GATTTTGATG GGTCATGCTC 
    GAACTCGTAC CGGTATCATC TCCGTCGCTT TTAAATTCTT CAGGTCTCTG 
    TTCCCTCGCC ATCACCGTAC TAACAGCATG AAGATAAAAA CAGGAACGTT 
    TTTGGGGGTT TCGATATCAT TGATTCTTAT AAACTTAGCT GCGATCATGG 
    AACGTGCAGA CGAGAATCTA TTGCCTTCGG TTTATAAAGA AGTGAGTGAA 
    GCATTTAACG CAGGACCATC AGATTTAGGC TACTTAACAT TCGTTAGAAA 
    CTTTGTTCAA GGACTTGCAT CACCATTAGC AGGAGTTCTT GTCATTACCT 
    ATGATCGTCC CATTGTTCTT GCAATAGGTA CTTTCTGTTG GGCTTTATCA 
    ACTGCTGCAG TTGGAGCCAG CAGCTACTTC ATTCAGGTTG CTTTATGGAG 
    AGCAGTGAAT GGTTTTGGAT TGGCAATTGT TATACCCGCG CTTCAATCGT 
    TTATTGCAGA TAGTTATAAG GATGGTGCGA GAGGAGCTGG TTTCGGAATG 
    TTGAACCTCA TTGGTACAAT CGGTGGTATA GGAGGAGGTG TTGTAGCAAC 
    TGTTATGGCT GGTTCAGAGT TTTGGGGCAT ACCGGGATGG CGTTGTGCTT 
    TTATAATGAT GGCAGCGCTC AGCGCAGTGA TCGGATTACT TGTCTTTCTC 
    TTCGTTGTTG ACCCGAGAAA GAACATTGAA CGAGAGGAAC TAATGGCTCA 
    TAAGATGAAT TCGAACTCGG TTTGGAATGA TTCATTAGCA GCTGCAAAAT 
    CTGTCGTCAA AGTAAGTACC TTTCAGATAA TCGTCGCGCA AGGAATCATT 
    GGTTCGTTTC CGTGGACCGC GATGGTTTTC TTTACAATGT GGTTTGAGCT 
    TATTGGCTTC GATCATAACC AGACTGCAGC TTTGCTTGGG GTATTTGCTA 
    CAGGAGGAGC GATAGGAACA TTAATGGGAG GGATAATAGC GGATAAAATG 
    TCGCGGATAT ATCCGAATTC GGGTAGAGTG ATGTGTGCGC AGTTCAGTGC 
    ATTCATGGGA ATCCCATTCT CTATTATTCT TCTGAAAGTA ATCCCACAAA 
    GCACAAGCAG CTACTCAATC TTCTCGATAA CTCTCTTCCT GATGGGTCTT 
    ACCATAACTT GGTGCGGATC AGCGGTCAAT GCACCAATGT TTGCAGAAGT 
    CGTTCCTCCA AGGCACCGTA CAATGATCTA CGCGTTTGAC CGTGCTTTCG 
    AAGGGTCATT CTCATCTTTT GCTGCGCCTT TGGTTGGAAT TTTGTCAGAG 
    AAACTGTTTG GGTATGACTC AAGAGGTATT GATCCTTTGA AAGGTTCCTC 
    TGTTCGTGAG GCTGATGCCC TTTCAAAGGG GCTTCTGTCA ATGATGGCTG 
    TTCCGTTTGG GCTCTGTTGT CTCTGTTACA CTCCGTTGCA TTTTGTTTTC 
    CAGAAAGATC GAGAAAACGC GAAAATCGCG AGCTCTAAAG AAACTGAAAT 
    GATCTGAGAG ACTTGCTCAT GTAGTCATGT TGTGATTCTT TTTATACCAC 
    AAACGATTTT AAAACCACTA TGTGAAGAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT4G36790.1 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major facilitator superfamily MFS-1 1.2e-34
    ProfileScan MFS 18.502
    HMMPanther SPINSTER 4.6e-111
    HMMPanther MAJOR FACILITATOR SUPERFAMILY MEMBER 4.6e-111
    superfamily Major facilitator superfamily, general substrate transporter 2e-45

    See the detailed result >

    AT4G36790.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G18590.1); Has 13584 Blast hits to 13542 proteins in 1941 species: Archae - 325; Bacteria - 10929; Metazoa - 520; Fungi - 516; Plants - 316; Viruses - 4; Other Eukaryotes - 974 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR