F21534

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21534

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21534

Determination of introduced cDNA(s)

  • RAFL06-12-J05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-J05 - Resource: pda03114

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-12-J05 - full reading
    TAAGAGACAG AGAGATCTTA ACACAAAACA AAGCAAACAC CAAAAAAAAC 
    AGAGATGGGT TTGGTTACAG ATGAAGTGAG AGCTAGGGCA GAGAAATACA
    CAGGAGATGA GATATGCCGT GAGAAGACAA AGGAGTTTCT CAAGGAAGTT
    TCTATGCCTA ATGGTTTATT GCCATTGAAG GACATTGAAG AAGTTGGTTA
    CGACAGAGAG ACAGGTATTG TCTGGCTGAA GCAGAAGAAG AGCATCACCC
    ACAAGTTTGA AGCCATTGGT AAACTTGTCT CTTACGCCAC CGAGGTCATT
    GCACAGGTGG AGGTCGGAAA GATCAAGAAG CTTACCGGTG TTAAGGCCAA
    GGAGCTTCTT ATTTGGGTCA CTCTCAATGA GCTTGTCTTG GAGCAGCCGA
    CAAGTTCAGG GAAGATCAAT TTCAGGACAC CAACTGGTCT GTCCAGGACT
    TTCCCAGTGT CTGCTTTCGT TGTTCCTGAA GTTGAGAAGC CTGCAACGGA
    GAAGAACAAT GGAACCACTG AGGTCAAAGA AGCTGTTGCA GTCACAGATG
    CTTAGTCTCT CTAATCTTAT TAATCTTATC CTTCCAATCA TGAATTACTT
    TCTGCTATTT GCTGCTTAAT TTCCTTTTAT CAATAAGATG ATACAATTTC

    Gene models with high sequence identity

    1. AT1G56580.1 [+] show detail - Protein of unknown function, DUF538
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Protein of unknown function DUF538 1.2e-14
    HMMPfam Protein of unknown function DUF538 2.5e-25

    See the detailed result >

    AT1G56580.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Curator Summary
    Encodes SMALLER WITH VARIABLE BRANCHES (SVB), a protein with a conserved domain of unknown function (DUF538). The trichomes of the SVB mutants are smaller and exhibit branches of variable length and number.
    Computational Description
    SMALLER WITH VARIABLE BRANCHES (SVB); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G09310.1); Has 365 Blast hits to 365 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 365; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR