F21550

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21550

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21550

Determination of introduced cDNA(s)

  • RAFL09-35-B14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-35-B14 - Resource: pda06092

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-35-B14 - full reading 
    GCTAAAGGTA AAAGGCGGAA CAACAAAAGA AACCCTAGCT TCCCTTTGTA 
    CCTCTCTCTG TTCCAAACCA TGTCGAAGAG AAAGACCAAA GAGCCAAAGG 
    TTGAGAATGT GACTCTTGGA CCAGCTGTTC GTGAAGGAGA GCAAGTCTTT 
    GGAGTTGTTC ACGTCTTTGC TTCATTCAAC GACACTTTCA TTCACGTGAC 
    TGATTTGTCT GGACGGGAAA CACTTGTTCG CATCACTGGT GGAATGAAGG 
    TGAAAGCCGA CAGAGATGAG TCCTCACCTT ATGCTGCTAT GCTTGCGGCA 
    CAAGATGTTG CTCAGCGATG CAAGGAACTT GGAATCACTG CCATACATGT 
    GAAACTCCGT GCCACTGGTG GTAACAAGAC CAAGACCCCT GGACCTGGTG 
    CTCAGTCTGC TCTAAGAGCC CTTGCCCGTT CTGGCATGAA AATTGGTCGC 
    ATTGAGGATG TGACTCCAAT CCCAACCGAC AGTACCCGCA GAAAGGGTGG 
    AAGAAGAGGA AGGAGGCTCT GAGTTATTTG GCCTCTCGTT GGATCTCCTT 
    ATGTAGCTTT CTCAATGTTT CATTTTGTTT TTTCTTAGTT TGAAAAGAGT 
    TTTGGAATTA CTATGCTTTG TTATAGTCTC AACTCTGAAC AGCTTTGGAT 
    CTTTTTCTGT ATGACCATAA GATATTCAAA AATTGGTAGT CATTTTATCT 
    CACAAAAAAA CCTTGAATTT GTGCTGTATG ATTTTGTAAA GTCTT

    Gene models with high sequence identity

    1. AT3G52580.1 [+] show detail - Ribosomal protein S11 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 40S RIBOSOMAL PROTEIN S14 2e-97
    HMMPanther Ribosomal protein S11 2e-97
    HMMPIR Ribosomal protein S11 2.9e-50
    Gene3D Ribosomal protein S11 2.4e-35
    superfamily Translational machinery components 6.2e-39
    HMMPfam Ribosomal protein S11 8e-42
    PatternScan Ribosomal S11, conserved site 0

    See the detailed result >

    AT3G52580.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S11 family protein
    Computational Description
    Ribosomal protein S11 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: Ribosomal protein S11 family protein (TAIR:AT3G11510.1); Has 8774 Blast hits to 8774 proteins in 2899 species: Archae - 250; Bacteria - 4863; Metazoa - 589; Fungi - 162; Plants - 729; Viruses - 0; Other Eukaryotes - 2181 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR