F21614

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21614

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21614

Determination of introduced cDNA(s)

  • RAFL05-18-D03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-D03 - Resource: pda01399

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-D03 - full reading
    ACCTGTTCAA CGAAACTCCT GAGCTCAGCT TCACTTTGCT CGACGTTATC 
    TTCTTCGTTC AGCGACAATG GCGTCGATTA CGAACCTCGC CTCTTCTCTC
    TCTTCACTCT CGTTCTCCTC CCAAGTTTCT CAAAGACCTA ACACCATTTC
    CTTCCCCCGC GCGAATTCAG TATTCGCATT ACCGGCGAAA TCCGCACGCC
    GCGCTTCTCT ATCTATCACC GCCACGGTAT CTGCTCCACC GGAGGAGGAG
    GAGATAGTTG AACTGAAGAA ATACGTCAAA TCGAGGCTTC CCGGAGGATT
    TGCTGCTCAG AAGATTATTG GCACTGGACG ACGTAAGTGC GCAATCGCTA
    GAGTTGTTCT TCAGGAAGGT ACTGGGAAGG TTATCATCAA CTATCGTGAT
    GCCAAGGAGT ACCTTCAGGG AAATCCATTG TGGCTTCAGT ATGTTAAAGT
    ACCATTGGTG ACTTTAGGAT ATGAGAATAG CTACGACATA TTTGTGAAAG
    CCCATGGAGG CGGTCTCTCA GGTCAAGCTC AAGCAATTAC CTTGGGAGTC
    GCACGTGCAC TCCTGAAGGT AAGTGCAGAC CACAGATCGC CTTTGAAGAA
    GGAAGGTTTG CTCACTAGAG ATGCGAGAGT GGTTGAAAGA AAGAAGGCCG
    GGCTCAAGAA GGCGCGTAAA GCCCCACAAT TCTCCAAGCG TTAAGAGTTT
    TACATATCAT TGGATCAACT CTTCAAGTAG ACTCCTCTGC CTCCATTTTT
    TTTAAAAACT TTTCTTGTCT ATTATCGGTC TTTTGTTTCA TGTTAATGTT
    TATGTGTAGA CGAACTAATA CAATCTCTGT TTTGTTTGAA TGGAACGCAA
    AGTTGATATG CTTTTGTAGC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G74970.1 [+] show detail - ribosomal protein S9
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S9, conserved site 0
    HMMPanther Ribosomal protein S9 7.9e-40
    superfamily Ribosomal protein S5 domain 2-type fold 1.1e-45
    HMMPfam Ribosomal protein S9 9.6e-43
    Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 6.4e-42

    See the detailed result >

    AT1G74970.1

    Model type
    Protein coding
    Short Description
    ribosomal protein S9
    Curator Summary
    ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
    Computational Description
    ribosomal protein S9 (RPS9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S9, conserved site (InterPro:IPR020574); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G49080.1); Has 7998 Blast hits to 7997 proteins in 2816 species: Archae - 205; Bacteria - 5347; Metazoa - 103; Fungi - 127; Plants - 149; Viruses - 0; Other Eukaryotes - 2067 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR