F21624

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21624

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21624

Determination of introduced cDNA(s)

  • RAFL05-04-C09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-C09 - Resource: pda00865

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-C09 - full reading 
    TCTTCTAATC CTAGCCGTTG CTTGTTTCGT CTCGCTAATC TCACCGGCGA 
    TTTCACAACA GGCTTGCAAA TCACAGAACT TGAACTCCGC CGGTCCGTTC 
    GATAGTTGCG AAGACCTTCC GGTACTCAAT TCCTACCTCC ATTACACCTA 
    CAATTCCTCA AATTCATCTC TCTCCGTCGC TTTCGTCGCC ACTCCATCTC 
    AAGCCAACGG TGGCTGGGTC GCTTGGGCTA TTAACCCTAC GGGGACTAAG 
    ATGGCTGGTT CTCAAGCCTT CCTCGCTTAC AGATCCGGCG GTGGTGCGGC 
    TCCGGTCGTG AAGACGTACA ACATTAGCAG CTACAGCAGT CTCGTCGAAG 
    GTAAACTTGC TTTTGATTTT TGGAATCTAC GCGCCGAGTC GTTAAGCGGC 
    GGTAGGATCG CCATTTTCAC GACGGTTAAG GTTCCGGCGG GAGCTGATAG 
    TGTGAATCAG GTATGGCAGA TCGGCGGCAA TGTTACCAAC GGTCGTCCCG 
    GTGTACATCC TTTCGGTCCT GATAATTTGG GCTCCCACCG TGTGTTGAGT 
    TTCACAGAAG ATGCAGCACC GGGCTCTGCT CCTTCGCCGG GATCTGCTCC 
    GGCGCCGGGC ACCAGTGGCT CGACTACCCC AGGAACAGCG GCGGGAGGTC 
    CAGGGAACGC GGGGTCATTG ACGAGGAACG TAAATTTTGG GGTCAATTTG 
    GGAATTTTGG TTTTGTTGGG TTCTATTTTT ATTTTCTGAA TGGGGATCTC 
    TCTCTAGTCT CTCTTCTCTT CTTGAGTCTC TCTCTATTTT TTTTTTTTTT 
    GGTTTGTTCG AACAATAATG GTGCCCCATA CTTTTGTACT GTTTTAGTCT 
    TAGGGCCATT TACTTTGTTT CACCACATAC TTAGAGTTAT TGGATTGTAT 
    GGACCATTAC TATCATGAGA TTGAGATCAT CTTATCTTCT C

    Gene models with high sequence identity

    1. AT3G07390.1 [+] show detail - auxin-responsive family protein
      E-value: 0; Score: 99.79

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan DOMON related 17.329
    HMMSmart DOMON related 5.3e-32
    HMMPfam Protein of unknown function DUF568, DOMON-like 9.5e-32

    See the detailed result >

    AT3G07390.1

    Model type
    Protein coding
    Short Description
    auxin-responsive family protein
    Curator Summary
    isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
    Computational Description
    Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR