F21648

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21648

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21648

Determination of introduced cDNA(s)

  • RAFL09-48-J22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-J22 - Resource: pda17755

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-J22 - full reading
    GATGCTTTCT TCAATATCAT TCTAAAAATA CTTTCTTCAC GTGCAAGCAT 
    TTGTGATCTC TCATGGCTTC TTCTTCTTCT TCATCTTCTT CGTCTCACAT
    AAGGAGACAC CATGTCTTTT CGCGCTTCCA CGGTCCAGAT GTCCGTAAAG
    GGTTTCTCAG TCATTTACAC AGTCTCTTTG CAAGCAAAGG TATCACGACT
    TTCAATGATC AGAATATCGA GAGAGGCCAG ACGATCGGAC CTGAGCTCAT
    ACAAGGGATT AAAGAAGCTA GAGTCTCGAT CGTTGTGCTC TCGAAGAATT
    ACGCTTCTTC CAGCTGGTGT TTAGATGAAC TTGTGGAAAT CTTGAAGTGC
    AAAGAAGCTT TGGGGCAGAT TGTGATGACG GTTTTTTTTT AAGTTGATCC
    GTCAGATGTT AAGAAACAGA GTGGAGTGTT CGGGAAAGCT TTTGAGAAGA
    CTTGTCAAGG GAAAAATGAG GAGGTGAAGA TCCGATGGAG AAATGCTTTG
    GCACATGTCG CTACCATTGC TGGGGAACAC TCTCTTAATT GGGATAATGA
    AGCAAAGATG ATCCAAAAGA TTGCTACAGA TGTTTCAGAC AAACTGAATC
    TCACACCGTC GAGGGATTTT GAGGGGATGG TAGGGATGGA AGCTCACTTG
    AAAAGATTGA ACTCTTTGTT ATGCCTGGAA AGTGATGAAG TCAAGATGAT
    TGGAATTTGG GGTCCAGCGG GAATTGGTAA GACTACCATT GCTAGAGCTT
    TATTCGACGA CAGACTCTCT AGCAGTTTTC AACATAAATG TTTTATGGGG
    AACCTCAAGG GAAGTATTAA GGGTGTTGCT GACCATGATT CCAAGTTGAG
    GTTGCAAAAG CAACTTCTGT CTAAGATTTT TAAGGAAGAG AATATGAAGA
    TACATCATTT AGGCGCAATA CGAGAAAGGC TACACGATCA AAGAGTGCTC
    ATCATTCTTG ACGATGTAGA TGATCTAAAG CAATTAGAGG TATTGGCTAA
    AGAAATCTCT TGGTTTGGTT CTGGAAGCCG AATCATCGGT ACCACAGAAG
    ATAAGAAGAT TTTGAAGGCA CATGGGATTC ACAATATCTA CCGTGTGGAT
    TTTCCATCGA AGAAAGACGC TCTTGAGATC TTATGTCTCT CTGCATTCAA
    ACAAAGCTCT ATACCAGATG GTTTTGAAGA GCTTGCCAAT AAAGTAGCTA
    AGCTTTGCAG CAACCTTCCA TTAGGCCTTT GTGTCGTGGG TGCATCTTTG
    CGTGGGGAGG GCAATCAAGA GTGGGAACGT CTATTATCTA GGATCGAATC
    TAGTCTTGAT AGGGATATCG ATGACATATT ACGAATCGGA TATGACAGAT
    TGTTGACGAA TGATAAATCT CTATTCCTTC ACATTGCATG CTTCTTCAAC
    TATGCAAAGG TTGATAATGT GACAGCCTTG TTAGCTGACA GTAACTTGGA
    TGTTGGAAAT GGTTTCAATA CCCTAGCCGA TAGATCTCTC GTGCGTATAT
    CTACCTATGA TGATGGGATA TCTGTGCTTT CTGATAGTAA CTTGGATGTT
    GGAAATAGTT TTAAGACCCT AGCAGATAAA TTTCTCATGC ATACTTCCCT
    ACGGCCGAAT AGAGATGCAC CATCTACTAC AACAATTGGG TAGACAGATA
    GTTCTTGAAC AGTCTAAGGA GCCCGGGAAA CGTGAATTTA TAATTGAGCC
    AGAAGAGATT CGTGATGTAC TGACAAATGA AACAGGTACT GGATCAGTCA
    TTGGTATATC ATTTGATACA TCCAATATCG GAGAGGTTTC TGTAAGTAAG
    GATGCTTTTG AAGGAATGCG AAATCTCCGT TTCCTAAGAA TCTATAGGTT
    GTTAGGTGGT GAAGTTACTT TGCAAATACC AGAAGATATG GATTATATAC
    CTCGTCTTAG GTTACTATAT TGGGATCGCT ATCCAAGAAA AAGTCTTCCT
    CGGAGATTCA AGCCGGAACG TCTCGTGGAA CTCCATATGC CACGCAGCAA
    TCTCGAGCTG CTCTGGGGAG GAATCGAGCC CCTTCCTAAT CTCAAGATCA
    TAAATCTGAA CCGATCCTAT AGGTTGAAAG AAATCCCAAA TCTTTCGAAA
    GCCACTAATC TCGAGAGATT GACACTTGAG AGCTGCTTAA GTTTGGTGGA
    GCTTCCCTCT TCTATTTCTA ATCTACACAA ACTGGAGATT CTAGATGTTA
    AATTCTGCTC TATGCTACAA GTTATTCCCA CCAACATCAA CTTAGCATCT
    CTTGAGAGAC TCGACGTGAG TGGTTGCTCA CGATTGAGAA CTTTTCCAGA
    TATCTCCAGT AACATCAAGA CACTCATTTT CGGAAATATA AAGATAGAAG
    ATGTCCCTCC ATCAGTTGGA TGTTGGTCTC GTCTTGATCA ACTTCACATT
    AGCAGCCGAA GCCTCAAGAG ATTGATGCAT GTACCACCAT GTATAACTTT
    GCTATCTCTG AGAGGTAGTG GTATAGAGAG GATTACAGAT TGCGTCATAG
    GTCTCACTCG TCTACATTGG CTGAATGTCG ATAGCTGCAG AAAACTCAAG
    TCAATTCTGG GTCTCCCCTC CTCCCTCAAG GTCCTAGATG CAAATGATTG
    TGTATCACTC AAGAGAGTAC GCTTCTCTTT CCATAACCCA ATGCACACAC
    TCGATTTCAA CAACTGTTTG AAACTGGATG AAGAAGCAAA AAGAGGAATC
    ATACAACGAT CAGTGTCCAG GTACATATGC TTACCATGTA AAAAGATCCC
    TGAAGAGTTC ACTCACAAAG CAACAGGCAA ATCCATAACC ATCCCTCTGG
    CACCTGGTAC TCTCTCTGCT TCCTCAAGGT TTAAGGCTTC CATTCTCATT
    TTGCCAGTTG AGAGCTACGA AACTGAAGGT ATAAGTTGTA GTATAAGAAC
    CAAAGGAGGT GTTGAAGTTC ATTGCTGCGA GCTTCCATAT CACTTTTTGC
    GTGTTCGGTC AGAACACCTG TTTATATTTC ATGGTGACTT GTTTCCCCAA
    GGAAACAAAT ACCATGAAGT GGATGTGACT ATGAGCGAGA TTACATTTGA
    GTTCAGCCAC ACTAAAATCG GTGACAAGAT TATTGAGTGT GGTGTACAGA
    TCATGACAGA GGGAGCTGAG GGTGACAGTA GCAGGGAATT GGAAGTTTTG
    AAACTGAGAG TAGCAGCAGC CCAGTTGGGA GATTTGTTGG GAAATTTGAA
    TTTGGAGGCA ACAACAATCA CCACACAGAT GGAAATGGAG ATGGAAACTA
    TGAAGCAGAA GGTTCCAAGT TCTCTCAAGA TGAAAACATC AAAACCAGCA
    AACGTTGGTT TTATGAGTTG GCTTCGGAAG CTTGGTCAGT GAAGAAGATG
    AATTCTCATG GAGTCTCATG AAGACCAAAC CAGTTTTTGG CACTTTCTTA
    GCTCCTTAAT CATCTTCATA AGGTAGGAGA TTGGGAATTT CGACGCAGCA
    CCTGATTCTC CAGTGATCAA ATCTAAGTCC ACACAAAGAG ACCATATTGT
    CCAATCAGTT CCAGATACTT GGTGCATTGC CTTCTGTTGT GAGCATAAAA
    CGGCAAACCC TATGAAAGAA GGTTGATAGC ATTAGAGAAA ACAGAGCATT
    GCAGCTCACA CAGTCCACCC ATGAACTGAT GATTTTTCCG GATTGATTGC
    ATCTTAGAAT CATAATCCTG TTTCCATTGG CCTTAATTAG CTGTTTAAGT
    ACTAAGAAAA GTCTTGTTAC CTTGTGATCT AGTTAATTAG CTGTTTAAAT
    ACTAAGAAAA ATCTTGTTAC CTTGTGAATT ACTTACAAAA

    Gene models with high sequence identity

    1. AT5G41740.1 [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 6.7e-38
    superfamily Toll-Interleukin receptor 5.1e-30
    superfamily P-loop containing nucleoside triphosphate hyd 2.2e-21
    superfamily "Winged helix" DNA-binding domain 0.000000011
    superfamily Toll-Interleukin receptor 0.00000073
    FPrintScan Disease resistance protein 2e-17
    FPrintScan Disease resistance protein 2e-17
    FPrintScan Disease resistance protein 2e-17
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00000029
    HMMPanther WERNER HELICASE INTERACTING PROTEIN 0.00034
    HMMPanther HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED 0.00034
    Gene3D no description 1.6e-21
    ProfileScan Toll-Interleukin receptor 19.832
    HMMPfam Leucine-rich repeat 0.17
    HMMPfam LRR_3 0.000024
    HMMPfam Toll-Interleukin receptor 2.6e-25
    HMMPfam NB-ARC 2e-38
    HMMSmart Toll-Interleukin receptor 0.00000000000022
    HMMSmart ATPase, AAA+ type, core 0.0026

    See the detailed result >

    AT5G41740.1

    Model type
    Protein coding
    Short Description
    Disease resistance protein (TIR-NBS-LRR class) family
    Computational Description
    Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR