F21716

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21716

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21716

Determination of introduced cDNA(s)

RAFL04-09-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-C05 - Resource: pda00200

full reading [+] show sequence

ATGACGGCAG GCAACAAGCA AAGCACGAAG TCATCTTCTT CCTATTTCTT 
CTATTCCTCC TTCTCCACGC TTCTTCTTCT TCTTCCTCAA TCTCTCTTAC 
GATTCCTTCA AATCATTCTT CCATGGCCAC CGTATCTTCT TCCTCCTGGC 
CAAACCCCAA CCCTAATCCC GATTCCACGT CTGCCTCAGA TTCCGATTCT 
ACTTTTCCCT CTCACCGCGA TCGCGTAGAC GAACCCGACT CTCTCGATTC 
CTTCTCCTCC ATGAGTCTTA ACTCCGACGA ACCTAATCAG ACTTCTAATC 
AATCGCCTCT TTCTCCCCCT ACGCCCAATT TACCGGTGAT GCCTCCTCCG 
TCCGTGCTTC ATCTTTCCTT TAACCAAGAT CATGCTTGCT TCGCTGTCGG 
CACTGACCGT GGCTTCCGGA TCCTTAATTG CGATCCCTTT CGCGAGATTT 
TCCGGCGTGA TTTCGATCGT GGCGGTGGTG TTGCAGTCGT GGAGATGCTT 
TTCAGATGCA ATATATTAGC CCTAGTTGGT GGCGGACCTG ATCCTCAATA 
TCCTCCTAAT AAGGTTATGA TTTGGGATGA TCACCAGGGC CGATGTATCG 
GAGAACTCTC TTTCAGGTCC GATGTTAGAT CCGTCCGGCT TAGGAGGGAT 
CGGATTATTG TCGTTCTTGA GCAGAAGATT TTTGTCTACA ATTTCTCTGA 
CCTCAAGCTG ATGCATCAGA TTGAAACCAT TGCCAACCCT AAGGGTTTGT 
GTGCTGTTTC TCAGGGTGTT GGTTCTATGG TTTTGGTATG TCCAGGTTTG 
CAGAAAGGTC AAGTTCGGAT CGAGCACTAC GCTTCTAAAC GGACCAAATT 
CGTCATGGCT CATGATTCCA GAATAGCTTG CTTCGCTCTC ACGCAGGATG 
GCCATTTGTT GGCCACTGCT AGCTCTAAGG GTACTCTGGT TCGGATCTTC 
AATACTGTTG ATGGTACCTT GCGTCAAGAG GTAAGGAGGG GTGCGGATAG 
AGCAGAGATC TACAGTTTGG CCTTCTCTTC AAATGCTCAG TGGTTAGCTG 
TCTCAAGTGA CAAAGGAACG GTCCATGTCT TTGGTCTCAA AGTCAACTCC 
GGATCTCAAG TGAAAGACTC ATCCCGAATT GCACCTGATG CTACTCCCTC 
ATCCCCATCG TCGTCTCTGT CTTTATTCAA AGGAGTGTTA CCGAGGTATT 
TCAGCTCGGA GTGGTCGGTG GCTCAGTTCA GGTTGGTTGA AGGAACTCAG 
TACATAGCCG CCTTTGGCCA TCAAAAGAAC ACCGTTGTTA TTCTTGGCAT 
GGATGGGAGC TTCTACAGAT GCCAGTTTGA TCCGGTGAAC GGCGGTGAAA 
TGTCTCAGCT TGAGTACCAC AACTGTCTGA AACCGCCTTC AGTTTTCTAA 
AAGCTTTACT ACTTATACTC TTTTGTTCCT TCTCTCTCTT TATATCTCTC 
TGCAACTTAA GCGGTGAGAT ATGGTGTATA GTTTTGTGTA TATAATAATG 
ATGGGTCGTC CTATAATTTG TAAAACCTTT TATCGC

Gene models with high sequence identity

AT3G62770.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	WD40/YVTN repeat-like-containing domain	3.1e-15
HMMSmart	WD40 repeat	340
HMMSmart	WD40 repeat	0.061
HMMSmart	WD40 repeat	0.14
superfamily	WD40 repeat-like-containing domain	6.3e-32
HMMPanther	WIPI-3,4	4.6e-201
HMMPanther	WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINO	4.6e-201
HMMPfam	WD40 repeat, subgroup	0.078
HMMPfam	WD40 repeat, subgroup	0.062

See the detailed result >

AT3G62770.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Curator Summary: Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description: AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Link: InterPro Scan - TAIR