F21736

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21736

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21736

Determination of introduced cDNA(s)

  • RAFL02-10-N23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-10-N23 - Resource: pda00172

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-10-N23 - full reading 
    CTTTCCCCTA AGTCTTGGTT CTTCTTCTCT CTAATACGAG AAGAAAAAGG 
    CGAAAACCTC GCCAATCCGA TTACGCGAAA AATCAAAGGT TTTTGGATAT 
    GGCGTCGAAG CGGATCTTGA AGGAATTGAA GGATCTCCAG AAGGATCCAC 
    CTACATCATG TAGCGCAGGT CCTGTTGCTG AAGACATGTT TCACTGGCAG 
    GCAACGATAA TGGGTCCTTC AGAGAGTCCT TATGCTGGAG GTGTTTTCCT 
    TGTAACCATC CATTTCCCTC CGGATTACCC ATTCAAGCCT CCTAAGGTGG 
    CCTTTAGGAC CAAGGTGTTC CATCCCAACA TTAACAGCAA CGGTAGCATT 
    TGCCTCGACA TCTTGAAGGA GCAGTGGAGT CCTGCGCTCA CCATTTCCAA 
    GGTGCTGCTA TCGATCTGTT CTTTGTTAAC CGATCCAAAC CCGGATGATC 
    CTTTGGTGCC CGAGATAGCT CACATGTACA AGACTGACAA GAACAAGTAC 
    GAGTCCACTG CACGAAGCTG GACTCAGAAG TATGCCATGG GCTAAATGGA 
    AAATCCCACC TACTAAATTA TCTCTTTATG AAGAAAAAAA TCTGCCTTAA 
    TTTCTATGTA TGATTCGATA GACATCTCTT TGTGTCCTTT TAACTTTCTG 
    AAGACAGGAC CAAATGAAGT GGGTCTTGTT TTAAACGAAA CAAAAAAAAA 
    CATCATCTTT GCG

    Gene models with high sequence identity

    1. AT5G53300.4 [+] show detail - ubiquitin-conjugating enzyme 10
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-conjugating enzyme/RWD-like 3.9e-68
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 9.2e-61
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    HMMSmart Ubiquitin-conjugating enzyme, E2 1.3e-79
    HMMPfam Ubiquitin-conjugating enzyme, E2 1.3e-52
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 3.7e-109
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 3.7e-109
    ProfileScan Ubiquitin-conjugating enzyme, E2 48.399

    See the detailed result >

    AT5G53300.4

    Model type
    Protein coding
    Short Description
    ubiquitin-conjugating enzyme 10
    Curator Summary
    Encodes a ubiquitin conjugating enzyme.
    Computational Description
    ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1).
    Link
    InterPro Scan - TAIR