F21738

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21738

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21738

Determination of introduced cDNA(s)

  • RAFL04-10-P04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-10-P04 - Resource: pda00305

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-10-P04 - full reading 
    GTCTTCTCCG TTCGAAATCG CATCCATCGC CGTCGTCGTC GGTGACGAAA 
    ACCACCGCGT AAAACCGTTT CCTAAATCAG ATGTTCAATC TTAGAAGTAT 
    CTCTTAGAAG CTCTCTTGTA TGAAAAAATG GGACTGTTAA GCATAATCCG 
    GAAGATCAAG AAGAAAGAGA AGGAGATGCG TATTCTTATG GTTGGACTTG 
    ATAATTCTGG GAAGACGACG ATTGTTCTGA AAATAAACGG AGAAGACACA 
    AGTGTGATTA GTCCAACTCT TGGATTCAAC ATCAAAACCA TTATCTACCA 
    AAAGTATACG CTAAATATAT GGGATGTTGG TGGGCAAAAG ACTATAAGAT 
    CGTATTGGAG GAATTACTTT GAGCAGACTG ATGGTTTGGT TTGGGTGGTT 
    GATAGTTCTG ATCTTAGGAG GTTAGATGAT TGCAAGATGG AACTTGACAA 
    TCTCTTGAAA GAAGAGAGGC TAGCTGGTTC ATCTTTGCTG ATACTAGCAA 
    ATAAGCAGGA TATTCAAGGT GCACTAACAC CTGATGAAAT TGGCAAGGTG 
    CTAAACTTAG AGTCCATGGA TAAAAGCCGG CACTGGAAGA TAGTGGGTTG 
    CAGCGCATAC ACGGGTGAAG GTTTGTTGGA AGGATTCGAT TGGTTGGTTC 
    AAGACATTGC CTCCAGGATT TACATGCTTG ACTAATCGAC TACTGCATTG 
    CACAATCAAT GGCTTGTTAT ACTCAACTAT ATGCAGTGAC TTTGTATTGG 
    CTCTAAGTTT TTCCTTCAGT TCTATTGTAA CGATGATTAG ACAAAACATA 
    AATATTTCCA AGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT2G18390.1 [+] show detail - ADP-ribosylation factor family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart ADP-ribosylation factor 1e-50
    HMMSmart Small GTPase SAR1-type 4.2e-22
    superfamily P-loop containing nucleoside triphosphate hyd 8.9e-48
    HMMPanther ADP-RIBOSYLATION FACTOR-LIKE 2, ARL2 5.7e-115
    HMMPanther ARF/SAR superfamily 5.7e-115
    FPrintScan ARF/SAR superfamily 2.7e-16
    FPrintScan ARF/SAR superfamily 2.7e-16
    FPrintScan ARF/SAR superfamily 2.7e-16
    FPrintScan ARF/SAR superfamily 2.7e-16
    ProfileScan ARF 21.951
    HMMPfam ARF/SAR superfamily 1.6e-69
    HMMTigr Small GTP-binding protein 2.4e-17
    Gene3D no description 2.1e-58

    See the detailed result >

    AT2G18390.1

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor family protein
    Curator Summary
    Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.
    Computational Description
    TITAN 5 (TTN5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1B (TAIR:AT5G14670.1); Has 10006 Blast hits to 10000 proteins in 420 species: Archae - 13; Bacteria - 39; Metazoa - 4544; Fungi - 1627; Plants - 1505; Viruses - 3; Other Eukaryotes - 2275 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR