F21832

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21832

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21832

Determination of introduced cDNA(s)

  • RAFL05-11-L11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-L11 - Resource: pda01209

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-L11 - full reading 
    GTGTGTTCTT GCTTTGAGCG AAACCCTAGA ATCGGTCTTA ACCCATTTGA 
    GCAGAGATGC TGCGAGTAGC AGGAAGGAGG CTTTTTTCTG TTTCGCAGAG 
    ATCATCGACG GCGACCTCCT TCGTCCTTTC CCGTGACCAT ACCCTTTCCG 
    ATGGAGGCAA CTCCTCTTCC GCTTCTAGAT CTGTCCCCTC TGCAGATCTC 
    TCATCTTTCA ATTCTTACCA CCGGAGCGTT ATAAGAGGTT TTGCTTCTCA 
    AGTCATTACT CAGGGAAATG AGATAGGTTT TGGTTCGGAA GTCCCAGCCA 
    CAGTCGAAGC TGTCAAAACA CCTAACTCAA AGATTGTCTA TGACGACCAT 
    AACCATGAGC GTTACCCACC TGGTGACCCT AGCAAGCGGG CATTCGCCTA 
    TTTTGTCTTG TCGGGTGGAA GGTTTGTTTA TGCCTCTGTT CTCCGCCTGC 
    TTGTTCTGAA GCTTATTGTG AGCATGTCTG CAAGTAAAGA TGTCCTTGCC 
    CTTGCATCCC TCGAGGTTGA CCTAGGGAGC ATAGAACCAG GAACTACCGT 
    GACAGTCAAG TGGCGTGGAA AGCCCGTCTT CATCAGGCGA AGAACAGAAG 
    ATGACATCAA GCTGGCCAAT AGTGTGGATG TTGGATCCCT GAGGGACCCA 
    CAAGAAGACT CGGTTAGAGT CAAGAATCCA GAATGGTTGA TCGTGGTTGG 
    AGTATGCACT CATTTGGGGT GCATCCCCTT GCCTAATGCT GGTGATTATG 
    GTGGTTGGTT TTGTCCGTGT CACGGATCAC ATTACGATAT ATCTGGAAGA 
    ATTAGGAAAG GTCCTGCACC ATACAACCTG GAAGTACCGA CCTACAGCTT 
    CTTGGAAGAG AATAAATTAC TCATTGGTTA ATGAATAAAG CACAACAGTC 
    CGAGTGTCAT GGTCTGGATG ATCTTAAATC TGTTTTTGTT TTTATATTTT 
    CCGGCATTTT AGCGTGCAAG TTCGCTTTCC TCACACTTTG GGCTCAGCAA 
    AAATTGGCTT GTTTTGCTGA ATAATACAAA CTTGTCATTG TATGACTTAG 
    TATCTGTCTC ATCTGGTGAA AATACATGTT

    Gene models with high sequence identity

    1. AT5G13440.1 [+] show detail - Ubiquinol-cytochrome C reductase iron-sulfur subunit
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ubiquinol-cytochrome c reductase, iron-sulphur subunit 6.2e-73
    HMMPfam Rieske [2Fe-2S] iron-sulphur domain 3e-16
    HMMPfam Ubiquinol cytochrome reductase, transmembrane domain 4.9e-16
    Gene3D Rieske [2Fe-2S] iron-sulphur domain 4.5e-49
    ProfileScan Rieske [2Fe-2S] iron-sulphur domain 17.546
    superfamily Rieske [2Fe-2S] iron-sulphur domain 3.9e-46
    superfamily Ubiquinol cytochrome reductase, transmembrane domain 6.3e-16
    HMMPanther Rieske iron-sulphur protein 2.9e-136
    FPrintScan Rieske iron-sulphur protein, C-terminal 3.2e-17
    FPrintScan Rieske iron-sulphur protein, C-terminal 3.2e-17
    FPrintScan Rieske iron-sulphur protein, C-terminal 3.2e-17

    See the detailed result >

    AT5G13440.1

    Model type
    Protein coding
    Short Description
    Ubiquinol-cytochrome C reductase iron-sulfur subunit
    Computational Description
    Ubiquinol-cytochrome C reductase iron-sulfur subunit; FUNCTIONS IN: metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome c reductase, iron-sulphur subunit (InterPro:IPR006317), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske iron-sulphur protein, C-terminal (InterPro:IPR005805), Rieske iron-sulphur protein (InterPro:IPR014349), Ubiquinol cytochrome reductase, transmembrane domain (InterPro:IPR004192); BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase iron-sulfur subunit (TAIR:AT5G13430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR