F21905

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21905

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21905

Determination of introduced cDNA(s)

  • RAFL09-95-B11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-95-B11 - Resource: pda09078

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-95-B11 - full reading
    ATTCCTCTTT TCTTCGTCTC CCACCATTTC TGCAGAAGAA GACAAATAAA 
    AAAGCTCTCA TTTATCTTCG TGGAGATCTA AAAGAAGGAG GAAGACATTT
    CTTCCCTCTG GATCTCCAAA AGTAAGAACA TTTACAAGAA ACGAGAGGTT
    TGGGTGGGGA AGGAAAGAAG GAGGAAGAGG CAATGTCAGC TAGGTATTGG
    TGTCACATGT GTTCACAAAT GGTGAATCCA GTTATTGGTG CCGAGATCAA
    ATGCCCCTTT TGCCAAAGCG GGTTTGTCGA GGAAATGAGC CGTGAGATTA
    ATGGCGGCAG CAGTAGCAGT CTAAGGGAGG TTCAAGACCC TGAGATTGAT
    TTTGGTACAG ACCGTGCATT GTCTCTATGG GGTCCAATCT TGCTTGGAAT
    GATGAGTAAT CCTCGTAGAC GTAGAAGGTT TAGGAGGACA GAGTTTGGTG
    TGGATAATGA TGAGGTCAAT GTATCTGATG ATGTTGATGG AAATGACAGC
    GTCGATATTG ATCGACATCA TCATCGTCGT CATCGCCACA GGCAACAAGG
    TAGAGAGATT GATTTAGACA GAGAGTTTGA GTCTATCCTT AGGAGGAGAC
    GGAGAAGCTC AGCTACTATA TTGCAGTTGC TTCAGGGTAT TCGTGCAGGG
    ATTGCTTCTG AGTATGAGAG CTCGGATCGA GACCTGTTAA ATCAATCAGC
    TGTTGTTCAG GGTTCAACGA GTTTGAATCA AAACCGGAAC AATACTTCTC
    TTTCTGCAAT TGGAGATTAC TTTGTTGGAT CCAGTTTAGA CCATTTGCTT
    GAACATCTAG CTGATAATGA TTCAATCAGG CACGGGAGTC TTCCAGCACG
    TAAAGAAGTT GTGGATAATC TCCCAACGGT TAAGATAAGT GAATCATTGC
    AGTGCTCGAT TTGTTTGGAT GATTTTGACA AAGGAAGTGA AGCTAAAGAG
    ATGCCGTGTA AGCACAAGTT TCACATCCGG TGTATAGTAC CGTGGCTCGA
    GCTTCACAGT TCATGTCCCG TGTGCCGATA TGAACTCCCT CCTGATGATG
    AGACCAAGGT TAATCCTGTA AGACCGAGAA CAAGAACTCT AGAGATCAAC
    GTAAGTAATG AGAATGTGGA AGATGATGCA AGGAACAGTA ATGTGAGCGA
    GAGAAGGTTC TCTTTTCCAT GGCCGTTCAG CGGATTATTC TCTTCATCCT
    CTTCGTCATC CGCATCGGCC TCGGGGTCAT CTCATCTCGG TGAGAACTCG
    TAAACTGCTA TTCCTCAGCT TATAGTACAT AAAATCTTGT TCACTCAGAT
    TGTTGAATAC TGCATAACAA ATAAACACTT TCGAGGAATG GAATCTTTTC
    TTTATTTG

    Gene models with high sequence identity

    1. AT4G26400.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 3.6e-08
    Gene3D no description 5.6e-14
    ProfileScan Zinc finger, RING-type 12.489
    HMMPanther RING ZINC FINGER PROTEIN 3.9e-40
    superfamily RING/U-box 1.1e-16
    HMMPfam Zinc finger, C3HC4 RING-type 8.4e-07

    See the detailed result >

    AT4G26400.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR