F21921

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21921

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21921

Determination of introduced cDNA(s)

  • RAFL06-69-F17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-F17 - Resource: pda03324

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-F17 - full reading 
    TCTCTCTCTC CGGCGCTAAC GGGATGTCCT CACCATAACG CCGTTAAGTC 
    TGGAACCCGT TTGAACGGAA TTATCAAAAC GGGAAGGAAT ATTCCGTTTG 
    AATGGCTCTG GAACAGTTAG GATTAGGAGT GAGCGCCGTT GACGGTGGAG 
    AGAACAGTAG CGCGCCGTCA AATGACGGTG GAGATGACGG CGTTAAGACG 
    GCGAGACTTC CTCGTTGGAC GAGACAAGAG ATTCTGGTTC TGATTCAAGG 
    GAAGAGAGTG GCGGAGAACA GAGTCCGGCG AGGGAGAGCG GCGGGTATGG 
    CTCTCGGGTC GGGTCAAATG GAGCCTAAAT GGGCTTCTGT TTCGTCTTAC 
    TGTAAACGTC ACGGTGTAAA TCGTGGGCCG GTTCAGTGCC GGAAAAGATG 
    GAGCAATCTC GCCGGAGATT ATAAGAAGAT TAAAGAATGG GAGTCTCAGA 
    TTAAGGAAGA GACTGAGTCC TATTGGGTTA TGAGGAATGA TGTTCGTAGA 
    GAGAAGAAGC TTCCTGGTTT TTTCGATAAG GAGGTTTATG ATATTGTTGA 
    CGGTGGTGTG ATTCCTCCGG CGGTTCCGGT TCTTTCGCTT GGATTGGCTC 
    CGGCGTCAGA CGAGGGATTG TTGTCTGATT TAGATCGGAG AGAAAGTCCT 
    GAGAAGTTGA ATTCTACTCC GGTGGCTAAA TCAGTTACTG ATGTTATAGA 
    CAAAGAGAAG CAAGAAGCTT GTGTAGCAGA TCAAGGTAGA GTGAAAGAGA 
    AACAGCCAGA AGCAGCAAAC GTGGAAGGTG GATCGACATC ACAAGAAGAG 
    AGGAAGCGTA AACGGACATC TTTTGGTGAA AAGGAAGAAG AAGAAGAAGA 
    AGGAGAAACA AAGAAGATGC AGAATCAGTT GATAGAGATA CTAGAAAGAA 
    ACGGGCAGTT GTTGGCGGCA CAGCTTGAGG TTCAGAATTT AAACTTAAAA 
    CTAGACAGAG AGCAAAGAAA AGATCACGGT GATAGCTTAG TCGCTGTTCT 
    CAATAAGCTC GCTGATGCTG TGGCAAAAAT CGCGGATAAG ATGTAGATTT 
    AGTAAAAGTT AGTTGTATAT CACTTTGGCC ATTACTTCTC ATTCTTCTTC 
    TTCCTTTTTT TTCAATCATT TATCACCATT GTTGATTGAA TATTGATGCC 
    ACCACAAGAG GTTATTATAC ACATCTTATA TAAACATTGA GATTAAGAAA 
    AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT2G33550.1 [+] show detail - Homeodomain-like superfamily protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    See the detailed result >

    AT2G33550.1

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Computational Description
    Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR