F22040

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22040

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22040

Determination of introduced cDNA(s)

  • RAFL09-69-D17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-D17 - Resource: pda06639

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-D17 - full reading 
    GCTTGTCTCC GATGGATCCC ACCATGAATC CAACTCCAAC TCCAAGCTCC 
    GCCGGCAACA GTGTCTGCAC AGATGAATTG ACCAACCTTC CCCCGGAGGA 
    CTCGCCACTC GACAGCGAGA AGGATGATAG CGTTGACTTC AGCCAGGAGC 
    AAGGATCGGA GTCAAATGAA GCTATTGACA CTGAGAATGG TTCAAGATCC 
    GTAGACAAGA ACCAATACTC TGAAACTGAA GTTGTAGTTA GAGCAAAAGA 
    TTTACAGACA GAACCTGATT CACTGGATGA TGATGTGGAG ATTGTGATCA 
    AAAACCAACA TAAGTATTAC ATATACTGCC CTTGCTGTGG TGAAGATATC 
    ACCAAAACAG TCAAGCTCGT GAAGATATCA GATCCCAAAC ACACAAAAGA 
    CCATGACAAA GCTGTTGACA GTGACACTGA GAATGGTTCA AAATCCAAAG 
    ACAAGAACAC AAAGGTTCCA TCATGGTTCT CTGATTTTAT TCAGCCGCTG 
    TTTTCTTCTG AAGACAGAGG AAAGAAAGGG GTTGTTGATT CAGAGTTACT 
    AGGAACTTAC GAAGATCTCG GTATCATTGG TGAGGAACCG AGCATAGATG 
    TCAGTAACGA GAAAGACAGA CCGAGTTTTC CAAAGTGGTA CCTCGATGTT 
    TTTGCTTGGT TATTCCTCTG TATTATTATT GCTCTTTCTG TCCTTTCGAC 
    TTCTCCACCG CCTTTCATTC AACCACATCT GCAATTACCA TCTATGCCTA 
    CATTGAGGAT GCCTTCTGCT TCTGTACTTT TGTTACTTCC CACATCTGCG 
    GTGTTGCTTC TCTTCATTAT TTCAATGAGG TCCCGTTTCA CTCCGAGATA 
    TCACAAGGAG AAAGGCGAGG TCGTTCCCAA GTCTACTGAT TCCAAGTCTC 
    ACGATGACCA AGCTGCAAAT ACTGATCAAG ATTTTGACAA GAAAACAGAC 
    AACAAAAGAA ATCGCCTAAC TCCTATATAC CCTTCATCAC TAGAGAAACC 
    TTCCAAGCAA ACTGTCAATA AGGAAACTCA AAATCACGAT AAAGAAGCTG 
    CAGATCCTGA CCAAGATGTA GACAAGGAAA CAGAGAACCA AAAAAGTCAC 
    CTAACTCCGA TATATCCTTC ACCACTGGAG CAACCTTCCA AGCAAATTAT 
    CAATAAGGAA ACTCAAACAG AACCTATGTT GCCACCTAAT GCTCAATCAG 
    AGATCCCAAA TAGTGTTGAA CCACGCAAAG GCGGTAATAA AGTAGAAATT 
    CTGAAAAGTA TTGTGTATGG AGGTCTTACA GAATCCATCA CAAGCCTATG 
    CACGGTAACA TCTGCGGCAG CTTCTGGTGC TTCAACTCTG AACGTTTTAG 
    CCTTGGGAGT TGCCAATTTG TCAAGCGGTC TTCTTCTGAC TGTTCACAGC 
    CTCCAAGAAC TAATAAACGA GAAACCCAGA AAACAAACCA ACACTGATGA 
    TTCTCCAGAA GAAGGAGAAG GAGAAGAAGA TCGATACGAG GAAGTACTCG 
    GGAGAAGAGA GTATTCGAGG ATTCACAGAG TGATCGCAAT CTCTTCTTTC 
    GTCATCTTCG GATTGATCCC ACCTTTAGTA TACGGTTTCT CGTTTCGAAA 
    AAAGATGGAA AAGAGACAAG AGTACAAGGT TTTAGCTGTT TACGCAGTGT 
    CTCTACTCTG CATCGTCTTG CTCTCAATAG CGAAAGCTTA CGTGTCGAAG 
    AAACGCGATT ATGTCAAGAC TCTGTTTCGG TACACGACGA CGGCGACGAC 
    GGCGTCGGGA TTCTCTCAAT TTGTGGGATA CTTGGTGAGT CAATGGCTTG 
    AGAAAAGCGG GTTTTATGAT GATTCTCCAG AAACTCAACG AGTTTGAAAC 
    GAGTTCTTTC GTCTTCTCTT CACTTCCCCT GTTCTTTTCG TACTCTTTAC 
    GTGGCCCAAT TTATTTTCCT TAAAAGTGGT AGAATTGTTT GATTTTGACC 
    CCAAGAAAAA AAACTTTTTT TGTGTGCTAC

    Gene models with high sequence identity

    1. AT4G27860.1 [+] show detail - vacuolar iron transporter (VIT) family protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF125, transmembrane 2.3e-16
    superfamily Cytokine, IL-1-like 6.2e-13

    See the detailed result >

    AT4G27860.1

    Model type
    Protein coding
    Short Description
    vacuolar iron transporter (VIT) family protein
    Computational Description
    vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217), Cytokine, IL-1-like (InterPro:IPR008996); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT4G27870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR