F22201

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22201

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22201

Determination of introduced cDNA(s)

  • RAFL09-48-A15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-A15 - Resource: pda06368

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-A15 - full reading
    AATGCATGAT TATTACGTTG GAGCCTCTTC GATAGAGAGA TTTTTGCTTT 
    CTCAATTTAT TATTTTTTGT GTCTCTCTCT CGCCCGATTT GGAGTTTTTA
    GGGTTTGATT TTTGTAATGT GAGAAAGGTT TCGTTATGTT AAAGAGGCAC
    TCTATCGCCA TTCTCTCCAG AATCGCAAGC TTCGATTCCC ATAAAACCCT
    TATGTCTTCC TTTACCGATC CCCTTTTTCT GCGATCGCTT TACTCTCCTC
    GATCCATCGC CATCAGATTT CATGGAGATT TTGCTCATAG ACTCTACAAT
    CCCATTCAAA TTTACAACAA CAACAACAAC AACAGTGGCT CTTGTAATGG
    TTTGTTCAAG GTTAAAGGTG GAGGAGGAAA GCCGAAAGGA TTCACCTTGC
    GAAGTTGTTT TGATTCTCAT AAGAAACCTG ATCAAAAGGC TCGAGCTTTA
    ACTCAACATC GCCGCTTTCT CCATGATCTG GGATCTGGGC CTAGTGAAGA
    ACGCGCCGCT GCCGGAACTA CCGACCTTGC CGATGGCCGT GGTGCATATC
    TGCGTACGAG GTTTCAAGGA AATGATAAGA TTGTTGTGGC TGTTGACATA
    GATGAGGTTC TTGGAAACTT TGTCTCGGCC CTTAACAGAT TCATTGCGGA
    CCGCTATTTG TCGAACCATT CAGTCTCAGA ATACCATGTC TATGAGTTCT
    TCAAGATATG GAACTGCTCT CGCAACGAAG CCGACTTACG TGTTCATGAA
    TTCTTTAAGA CATCATATTT CAAGAAAGGG ATCCATCCTC TTCCAGGTGC
    CCATAAGACT CTTCACAAGC TATCAAAATA TTGCGACATG TCAGTTGTGA
    CGTCCCGGCA GAATGCGATA AAGGAGCACA CACTTGAGTG GATCGAGATA
    CATTTCCCGG GACTATTTAA ACAGATTCAT TTTGGGAACC ATTTTGCTCT
    TCATGGAGAG TCTAGACCAA AGTCTGAAAT CTGCAGATCA TTTGGAGCAG
    AGATATTGAT TGACGATAAC CCAAGATATG CCGAGGAATG CGCTAACATT
    GGAATGAAGG TTCTCCTCTT TGACTATGAA AATTCATACC CTTGGTCTAA
    GACAGAGTCT GTGGATCGGC ATCCTTTGGT GACTAGAGTT CATAATTGGG
    AAGAGGTGGA GCAGCAGATT CTCTCATTGG CAGTGTCAAA GTGTTAAATA
    TTTTCTGCAA CAAGAAATGT TATTTTGCCA GTGCAGAATT ATAGTATTGT
    ACAAACTTGA TGGGAGAAAT AAGTAGCAAA CAGAGATGGA ATTAGCTTTA
    ATTGTCCCTT TTTAGCATCA TTTCAATCTA TTTTTTTTTA TAATTTAGTT
    TTGTTGTTGC AAATACATTT GATCTGATGT ATATAAATTA AATAAAGTTT
    TTATTTCAAA TCC

    Gene models with high sequence identity

    1. AT4G33140.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NT5C 1.3e-16
    superfamily HAD-like 6.5e-14

    See the detailed result >

    AT4G33140.1

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Computational Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5'(3')-deoxyribonucleotidase (InterPro:IPR010708); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR