F22202

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22202

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F22202

Determination of introduced cDNA(s)

  • RAFL05-11-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-D11 - Resource: pda01232

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-D11 - full reading 
    ACTTCCTTTC CTTGCTTCAG CTCCCCTTTT CTTATCCGGA AACCAAAAAC 
    TTCCGGTGAT AAAACCTCCT TCGTCATCTC TCTACTTCTT GCTGAATTTT 
    GTCTGTCTTT GAAGTGGATA AAATGGCGTC AACTTTCACT GCCACATCTT 
    CTATTGGTTC AATGGTTGCT CCGAATGGTC ACAAATCTGA TAAGAAACTT 
    ATCAGCAAGT TGTCTTCAAG CTCATTTGGA AGGAGACAAA GTGTGTGTCC 
    TAGACCCAGA AGATCCAGTT CTGCAATTGT GTGCGCAGCA AAGGAATTAC 
    ATTTCAACAA AGATGGGACT ACCATTAGGA GACTTCAAGC TGGTGTCAAC 
    AAGCTCGCAG ATCTTGTTGG TGTTACACTT GGACCCAAAG GACGAAATGT 
    TGTTCTTGAG AGCAAGTATG GATCACCACG AATTGTTAAT GATGGTGTGA 
    CTGTTGCAAG AGAGGTTGAG TTGGAAGACC CGGTTGAGAA CATTGGCGCT 
    AAGCTTGTGA GGCAAGCGGC TGCCAAAACC AATGACTTGG CTGGTGACGG 
    TACAACAACA TCTGTTGTTC TTGCACAAGG TTTTATCGCT GAGGGTGTCA 
    AGGTGGTAGC TGCTGGTGCA AACCCTGTTT TGATCACCAG AGGTATTGAG 
    AAGACAGCAA AGGCTTTGGT TACCGAGCTC AAGAAAATGT CTAAGGAGGT 
    TGAAGACAGT GAACTTGCAG ATGTTGCAGC TGTTAGTGCG GGTAACAACG 
    ACGAAATTGG AAATATGATT GCTGAAGCAA TGAGCAAAGT GGGCAGGAAA 
    GGTGTGGTGA CCCTTGAGGA GGGTAAAAGT GCCGAGAACA ACCTCTACGT 
    CGTAGAAGGA ATGCAATTTG ACCGTGGTTA TATCTCTCCT TACTTTGTGA 
    CAGACAGCGA GAAAATGTCC GTCGAGTTCG ACAATTGCAA GTTACTTCTC 
    GTTGACAAGA AAATTACCAA TGCAAGGGAT CTTGTTGGTG TTTTGGAGGA 
    TGCAATTAGA GGCGGATACC CAATATTAAT TATTGCTGAA GACATTGAAC 
    AAGAAGCTTT AGCGACTCTT GTTGTAAACA AGCTTAGAGG TACACTGAAG 
    ATAGCAGCTC TCAGAGCTCC AGGGTTTGGA GAGCGCAAGA GCCAATACCT 
    TGATGATATT GCCATTCTAA CTGGAGCAAC TGTGATCCGT GAGGAAGTTG 
    GTCTTTCACT TGACAAAGCT GGAAAAGAGG TTCTTGGTAA TGCTTCAAAG 
    GTTGTCCTCA CAAAGGAGAC CTCGACCATA GTGGGTGATG GAAGCACACA 
    GGATGCAGTG AAAAAGCGTG TTACACAGAT TAAAAATCTT ATTGAGCAAG 
    CGGAGCAAGA TTACGAGAAG GAGAAACTCA ATGAGAGAAT TGCAAAGCTC 
    TCTGGTGGAG TTGCTGTGAT TCAGGTTGGA GCACAAACTG AGACAGAACT 
    CAAAGAGAAG AAGTTGAGAG TTGAAGATGC TCTTAATGCA ACAAAGGCCG 
    CTGTCGAGGA AGGTATTGTT GTTGGTGGTG GTTGCACTCT GCTTCGTCTT 
    GCTTCCAAGG TTGATGCCAT TAAAGCCACG CTTGATAATG ATGAAGAAAA 
    GGTTGGAGCG GATATAGTTA AAAGAGCACT AAGTTACCCC CTAAAACTAA 
    TCGCCAAGAA TGCTGGTGTT AATGGAAGTG TAGTTAGCGA GAAGGTGCTT 
    TCCAACGATA ACGTGAAATT CGGTTACAAT GCTGCAACCG GCAAGTACGA 
    GGATTTGATG GCTGCAGGAA TCATCGATCC AACAAAGGTT GTGAGATGTT 
    GCTTGGAACA CGCAGCTTCG GTTGCAAAGA CTTTCTTGAT GTCGGACTGC 
    GTTGTTGTTG AGATCAAGGA ACCTGAACCA GTTCCCGTCG GCAACCCAAT 
    GGACAACTCA GGATATGGAT ACTAAGAGGA GATAGGCTAA TATTGAAACG 
    GATTACTTTA GCTTGCGAGT GTAATGATTT TGAACAAGAG AATGTGTAAT 
    GTGAAACTGA AATTTTGAAT TAATCATCAT ATGAATAAAT CATGATTCCC 
    TCAATGCTTC

    Gene models with high sequence identity

    1. AT1G55490.1 [+] show detail - chaperonin 60 beta
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Chaperonin Cpn60 3.6e-301
    FPrintScan Chaperonin Cpn60 1e-65
    FPrintScan Chaperonin Cpn60 1e-65
    FPrintScan Chaperonin Cpn60 1e-65
    FPrintScan Chaperonin Cpn60 1e-65
    FPrintScan Chaperonin Cpn60 1e-65
    HMMPanther RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT, 0
    HMMPanther Chaperonin Cpn60/TCP-1 0
    Gene3D no description 2.7e-75
    HMMPfam Chaperonin Cpn60/TCP-1 1.5e-119
    superfamily Chaperonin Cpn60/TCP-1 6.1e-71
    superfamily GroEL apical domain-like 1.6e-55
    superfamily GroEL-intermediate domain like 1.7e-11
    HAMAP Chaperonin Cpn60 36.264
    PatternScan Chaperonin Cpn60, conserved site 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G55490.1

    Model type
    Protein coding
    Short Description
    chaperonin 60 beta
    Curator Summary
    encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
    Computational Description
    chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR