F22212

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22212

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22212

Determination of introduced cDNA(s)

  • RAFL05-07-M02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-M02 - Resource: pda01149

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-M02 - full reading 
    ACGCTGTTGA ATCACTGAAG AGAGAAAGCT TGAAGACGGC GAGAGCTCCA 
    TCTTTTCTCA GGCATCTCTT ATCTTCAAAT CACAATGTCT CTGGTTGCAA 
    ATGAGGAGTT TCAGCACATT TTGCGTGTGC TCAACACTAA CGTTGATGGT 
    AAGCAAAAGA TTATGTTTGC CCTTACCTCT ATCAAAGGTA TTGGAAGGAG 
    ATTGGCCAAC ATTGTCTGCA AGAAAGCCGA TGTCGACATG AACAAGAGGG 
    CTGGTGAGTT ATCTGCAGCT GAGATTGACA ACCTCATGAC TATTGTTGCA 
    AACCCAAGAC AGTTCAAGAT TCCAGACTGG TTTTTGAACA GACAGAAAGA 
    TTACAAGGAT GGGAAGTACT CTCAAGTTGT CTCCAATGCC CTTGACATGA 
    AGCTCAGGGA TGATCTTGAG CGTCTCAAGA AAATCAGAAA CCATCGTGGT 
    CTGAGACATT ACTGGGGTCT CCGTGTTCGT GGACAACACA CCAAGACAAC 
    TGGTCGCAGA GGAAAGACTG TTGGTGTGTC TAAGAAGCGT TAAGCCAATG 
    TTGCTAGTTG CAGCTGGATT GGATCTTTGA TAAGGACTGA ATTTTAAATT 
    TTGTTGTTCG TACAATTTTG CACGACTCGA TTTTGGGTCT TTTGTGAGAG 
    ATCTTCTCTA CTGTCATATT GCTTTTAAGA TAATGTTGCT TACTGGATCT 
    TATGTCACCT CTCTAGTTAC ATCATCTTTC GGTTGGCCTA TTTAAAAAAA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G34030.1 [+] show detail - Ribosomal protein S13/S18 family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein S13-like, H2TH 2.6e-37
    HMMPanther 40S RIBOSOMAL PROTEIN S18 5.4e-114
    HMMPanther 30S/40S RIBOSOMAL PROTEIN 5.4e-114
    PatternScan Ribosomal protein S13, conserved site 0
    HMMPIR Ribosomal protein S13 8e-70
    ProfileScan Ribosomal protein S13 35.304
    HMMPfam Ribosomal protein S13 2.5e-42
    Gene3D no description 4.9e-12
    Gene3D no description 8.1e-05

    See the detailed result >

    AT1G34030.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S13/S18 family
    Computational Description
    Ribosomal protein S13/S18 family; FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: S18 ribosomal protein (TAIR:AT4G09800.1); Has 7956 Blast hits to 7953 proteins in 2911 species: Archae - 236; Bacteria - 5065; Metazoa - 352; Fungi - 176; Plants - 401; Viruses - 0; Other Eukaryotes - 1726 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR