F22220

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22220

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • variegated (PATO:0000335)
    (Rosette leaf::Color::variegated)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22220

Determination of introduced cDNA(s)

  • RAFL09-07-E08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-E08 - Resource: pda05157

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-E08 - full reading
    AAACTCTTTG ATTAGCTCAT AAATACTAAA CCAGTTGACC ATTTTTTTCT 
    GATAAACAAT CAATGGCAAG GTCACCTTGT TGCGAGAAGA ACGGACTCAA
    GAAAGGGCCT TGGACATTTG AAGAAGACCA GAAGCTTGTT GACTATATCC
    AGAAACATGG TTATGGTAAC TGGAGAACCC TCCCCAAAAA TGCCGGTTTG
    CAAAGATGTG GCAAAAGTTG TAGGTTAAGG TGGACTAATT ATCTCCGACC
    AGATATAAAG CGAGGAAGGT TCTCTTTTGA GGAAGAAGAA ACCATTATTC
    AGCTTCATAG CTTCTTAGGA AACAAGTGGT CTGCGATTGC GGCGCGTTTA
    CCAGGAAGAA CAGATAATGA GATCAAGAAC TTTTGGAACA CTCATATAAG
    AAAGAAGCTA CTTAGAATGG GGATTGATCC AGTGACTCAC AGTCCACGAC
    TCGATCTCCT CGATATCTCA TCCATCTTAG CTTCATCTCT ATACAATTCA
    TCTTCACATC ACATGAACAT GTCAAGACTC ATGATGGATA CTAATCGTCG
    TCATCACCAG CAACATCCAT TGGTTAACCC CGAGATACTC AAGCTCGCTA
    CCTCTCTCTT CTCTCAAAAT CAAAACCAAA ACCTTGTGGT GGATCATGAC
    TCGAGAACTC AAGAGAAGCA AACAGTTTAT AGCCAAACCG GAGTAAACCA
    ATACCAAACC AACCAATATT TCGAGAACAC GATTACTCAA GAACTCCAAT
    CTTCCATGCC ACCATTCCCC AATGAAGCTC GTCAGTTTAA CAACATGGAT
    CATCACTTCA ATGGTTTTGG AGAACAAAAT CTTGTTTCAA CTTCTACTAC
    GTCAGTCCAA GATTGCTATA ATCCGTCATT CAACGATTAT TCAAGTTCAA
    ATTTTGTCTT GGATCCTTCT TATTCGGATC AGAGCTTCAA CTTCGCAAAT
    TCGGTCTTAA ACACGCCATC CTCGAGCCCG AGCCCGACTA CGTTAAACTC
    GAGTTACATC AATAGTAGCA GTTGCAGCAC TGAGGATGAA ATAGAAAGCT
    ATTGCAGTAA TCTCATGAAG TTTGATATTC CCGATTTCTT GGACGTTAAT
    GGTTTTATTA TATAATTCCA AGAAACAAAA TAAAACTCGA GTGGGATACA
    GTTTTCTTTT TATTCTTTGT TGTAATCTTA AGACTTTTTT TTTTTTGTTT
    TTCCGATTTG TTTACTTGTA AAATACTGTT TTCGTTTTGT TGTTAATTTG
    TTATATTTCT CTAGAGTTTA TAGCTAATAC CATTTTTAAA ATT

    Gene models with high sequence identity

    1. AT4G21440.1 [+] show detail - MYB-like 102
      E-value: 0; Score: 99.69

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 3.1e-23
    superfamily Homeodomain-like 4.2e-12
    HMMPfam Myb, DNA-binding 8.7e-16
    HMMPfam Myb, DNA-binding 5e-14
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 2.4e-138
    HMMPanther Myb transcription factor 2.4e-138
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 24.029
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 17.4
    HMMSmart SANT, DNA-binding 4.1e-13
    HMMSmart SANT, DNA-binding 1.4e-15
    Gene3D Homeodomain-related 1.4e-16
    Gene3D Homeodomain-related 3.2e-17

    See the detailed result >

    AT4G21440.1

    Model type
    Protein coding
    Short Description
    MYB-like 102
    Curator Summary
    Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family.
    Computational Description
    MYB-like 102 (MYB102); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 74 (TAIR:AT4G05100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR