F22220

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
T1	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) variegated (PATO:0000335) (Rosette leaf::Color::variegated)
T2
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22220

Determination of introduced cDNA(s)

RAFL09-07-E08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-E08 - Resource: pda05157

full reading [+] show sequence

AAACTCTTTG ATTAGCTCAT AAATACTAAA CCAGTTGACC ATTTTTTTCT 
GATAAACAAT CAATGGCAAG GTCACCTTGT TGCGAGAAGA ACGGACTCAA 
GAAAGGGCCT TGGACATTTG AAGAAGACCA GAAGCTTGTT GACTATATCC 
AGAAACATGG TTATGGTAAC TGGAGAACCC TCCCCAAAAA TGCCGGTTTG 
CAAAGATGTG GCAAAAGTTG TAGGTTAAGG TGGACTAATT ATCTCCGACC 
AGATATAAAG CGAGGAAGGT TCTCTTTTGA GGAAGAAGAA ACCATTATTC 
AGCTTCATAG CTTCTTAGGA AACAAGTGGT CTGCGATTGC GGCGCGTTTA 
CCAGGAAGAA CAGATAATGA GATCAAGAAC TTTTGGAACA CTCATATAAG 
AAAGAAGCTA CTTAGAATGG GGATTGATCC AGTGACTCAC AGTCCACGAC 
TCGATCTCCT CGATATCTCA TCCATCTTAG CTTCATCTCT ATACAATTCA 
TCTTCACATC ACATGAACAT GTCAAGACTC ATGATGGATA CTAATCGTCG 
TCATCACCAG CAACATCCAT TGGTTAACCC CGAGATACTC AAGCTCGCTA 
CCTCTCTCTT CTCTCAAAAT CAAAACCAAA ACCTTGTGGT GGATCATGAC 
TCGAGAACTC AAGAGAAGCA AACAGTTTAT AGCCAAACCG GAGTAAACCA 
ATACCAAACC AACCAATATT TCGAGAACAC GATTACTCAA GAACTCCAAT 
CTTCCATGCC ACCATTCCCC AATGAAGCTC GTCAGTTTAA CAACATGGAT 
CATCACTTCA ATGGTTTTGG AGAACAAAAT CTTGTTTCAA CTTCTACTAC 
GTCAGTCCAA GATTGCTATA ATCCGTCATT CAACGATTAT TCAAGTTCAA 
ATTTTGTCTT GGATCCTTCT TATTCGGATC AGAGCTTCAA CTTCGCAAAT 
TCGGTCTTAA ACACGCCATC CTCGAGCCCG AGCCCGACTA CGTTAAACTC 
GAGTTACATC AATAGTAGCA GTTGCAGCAC TGAGGATGAA ATAGAAAGCT 
ATTGCAGTAA TCTCATGAAG TTTGATATTC CCGATTTCTT GGACGTTAAT 
GGTTTTATTA TATAATTCCA AGAAACAAAA TAAAACTCGA GTGGGATACA 
GTTTTCTTTT TATTCTTTGT TGTAATCTTA AGACTTTTTT TTTTTTGTTT 
TTCCGATTTG TTTACTTGTA AAATACTGTT TTCGTTTTGT TGTTAATTTG 
TTATATTTCT CTAGAGTTTA TAGCTAATAC CATTTTTAAA ATT

Gene models with high sequence identity

AT4G21440.1 [+] show detail - MYB-like 102
E-value: 0; Score: 99.69

InterPro Scan Digest

Program	Description	E-value
superfamily	Homeodomain-like	3.1e-23
superfamily	Homeodomain-like	4.2e-12
HMMPfam	Myb, DNA-binding	8.7e-16
HMMPfam	Myb, DNA-binding	5e-14
HMMPanther	R2R3-MYB TRANSCRIPTION FACTOR	2.4e-138
HMMPanther	Myb transcription factor	2.4e-138
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	24.029
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	17.4
HMMSmart	SANT, DNA-binding	4.1e-13
HMMSmart	SANT, DNA-binding	1.4e-15
Gene3D	Homeodomain-related	1.4e-16
Gene3D	Homeodomain-related	3.2e-17

See the detailed result >

AT4G21440.1

Model type: Protein coding
Short Description: MYB-like 102
Curator Summary: Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family.
Computational Description: MYB-like 102 (MYB102); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 74 (TAIR:AT4G05100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR