F22516

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22516

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22516

Determination of introduced cDNA(s)

  • RAFL07-07-I23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-07-I23 - Resource: pda03933

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-07-I23 - full reading
    ATTCCCTCAC TTTCACTCTC ACTATCTGTT GACTTCACAT GGCTTCCACC 
    GCCGCAACTG CAGCTCTTTC GATCATCAAA TCCACCGGTG GCGCCGCCGT
    TACACGCTCC TCCCGCGCCT CCTTTGGACA CATTCCCTCC ACATCTGTCT
    CCGCACGTCG CCTTGGCTTC TCCGCCGTCG TTGACTCTCG TTTCTCGGTC
    CACGTGGCGT CCAAGGTCCA CTCCGTGCGC GGAAAGGGCG CCAGGGGAGT
    GATTACGATG GCGAAGAAGA GTGTTGGAGA TCTGAATTCT GTAGATTTGA
    AGGGGAAGAA GGTGTTTGTT AGAGCTGATC TCAATGTACC TCTCGATGAC
    AACCAGAATA TCACTGACGA CACTAGAATC AGAGCCGCCA TTCCCACCAT
    CAAGTTTTTG ATTGAGAATG GTGCTAAGGT CATCCTCTCC ACTCATTTGG
    GAAGGCCAAA GGGTGTCACT CCAAAGTTCA GCTTGGCTCC TCTTGTTCCC
    AGATTATCAG AGCTCCTTGG TATTGAGGTC GTGAAAGCTG ATGATTGTAT
    TGGTCCAGAA GTGGAAACCT TGGTGGCTTC CCTTCCTGAA GGTGGAGTTT
    TGCTTCTTGA GAACGTGAGG TTTTACAAGG AGGAAGAGAA GAACGAACCT
    GATTTTGCTA AGAAGCTTGC TTCTCTAGCT GACCTTTATG TCAACGATGC
    GTTCGGGACT GCTCACAGAG CCCATGCTTC AACAGAGGGA GTCACTAAGT
    TCTTGAAGCC ATCAGTTGCT GGTTTCCTTT TGCAAAAGGA GTTGGACTAC
    CTTGTTGGTG CGGTTTCAAA CCCAAAGAGA CCATTTGCTG CCATTGTGGG
    AGGTTCCAAG GTCTCATCTA AGATTGGAGT TATCGAATCG CTTCTTGAGA
    AATGTGACAT CCTTCTGCTT GGTGGTGGAA TGATCTTTAC ATTCTACAAG
    GCGCAAGGTC TTTCCGTTGG CTCCTCCCTT GTTGAAGAAG ACAAGCTTGA
    ATTGGCTACA ACACTCCTTG CCAAGGCTAA GGCCAGAGGA GTCTCTCTGT
    TGTTACCAAC AGATGTTGTG ATTGCTGACA AGTTCGCTCC TGATGCCAAC
    AGCAAGATTG TGCCAGCATC AGCCATTCCT GATGGGTGGA TGGGATTGGA
    CATCGGTCCA GACTCGGTGA AAACATTCAA CGAAGCTCTG GATACCACGC
    AGACAGTCAT TTGGAATGGA CCAATGGGAG TTTTCGAGTT TGAAAAGTTT
    GCAAAAGGAA CTGAGGCGGT AGCGAATAAA CTAGCAGAGC TAAGCAAAAA
    GGGAGTGACA ACGATAATAG GAGGAGGAGA CTCGGTGGCA GCAGTGGAGA
    AAGTGGGAGT AGCAGGAGTC ATGAGTCACA TCTCCACAGG TGGTGGTGCC
    AGTTTGGAGC TCTTGGAAGG CAAAGTGCTT CCCGGTGTCG TCGCTCTTGA
    TGAAGCAACG CCAGTCACTG TTTAACAACA TCTCTTTATT ACACCTGAAG
    GGACCCCCCT AAATGAGTTT CTTCTTCTTA TTCTGTTGTA AATCAAAGTC
    TTTGTTGTAC CATCAAATCC ATAGAGAGGA GGGACTCTTT TTGTCTCAAA
    TAAAATCAAA TACAGTGACA TTCGCTAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G56190.1 [+] show detail - Phosphoglycerate kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Phosphoglycerate kinase 2.7e-162
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    HMMPanther Phosphoglycerate kinase 3.5e-265
    Gene3D Phosphoglycerate kinase, N-terminal 1.5e-65
    Gene3D Phosphoglycerate kinase, C-terminal 2.3e-80
    PatternScan Phosphoglycerate kinase, conserved site 0
    HAMAP Phosphoglycerate kinase 42.104
    HMMPfam Phosphoglycerate kinase 9.3e-161

    See the detailed result >

    AT1G56190.1

    Model type
    Protein coding
    Short Description
    Phosphoglycerate kinase family protein
    Computational Description
    Phosphoglycerate kinase family protein; FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: phosphoglycerate kinase 1 (TAIR:AT3G12780.1); Has 10902 Blast hits to 10876 proteins in 3041 species: Archae - 254; Bacteria - 5279; Metazoa - 453; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4208 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR