F22516

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22516

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22516

Determination of introduced cDNA(s)

  • RAFL07-07-I23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-07-I23 - Resource: pda03933

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-07-I23 - full reading 
    ATTCCCTCAC TTTCACTCTC ACTATCTGTT GACTTCACAT GGCTTCCACC 
    GCCGCAACTG CAGCTCTTTC GATCATCAAA TCCACCGGTG GCGCCGCCGT 
    TACACGCTCC TCCCGCGCCT CCTTTGGACA CATTCCCTCC ACATCTGTCT 
    CCGCACGTCG CCTTGGCTTC TCCGCCGTCG TTGACTCTCG TTTCTCGGTC 
    CACGTGGCGT CCAAGGTCCA CTCCGTGCGC GGAAAGGGCG CCAGGGGAGT 
    GATTACGATG GCGAAGAAGA GTGTTGGAGA TCTGAATTCT GTAGATTTGA 
    AGGGGAAGAA GGTGTTTGTT AGAGCTGATC TCAATGTACC TCTCGATGAC 
    AACCAGAATA TCACTGACGA CACTAGAATC AGAGCCGCCA TTCCCACCAT 
    CAAGTTTTTG ATTGAGAATG GTGCTAAGGT CATCCTCTCC ACTCATTTGG 
    GAAGGCCAAA GGGTGTCACT CCAAAGTTCA GCTTGGCTCC TCTTGTTCCC 
    AGATTATCAG AGCTCCTTGG TATTGAGGTC GTGAAAGCTG ATGATTGTAT 
    TGGTCCAGAA GTGGAAACCT TGGTGGCTTC CCTTCCTGAA GGTGGAGTTT 
    TGCTTCTTGA GAACGTGAGG TTTTACAAGG AGGAAGAGAA GAACGAACCT 
    GATTTTGCTA AGAAGCTTGC TTCTCTAGCT GACCTTTATG TCAACGATGC 
    GTTCGGGACT GCTCACAGAG CCCATGCTTC AACAGAGGGA GTCACTAAGT 
    TCTTGAAGCC ATCAGTTGCT GGTTTCCTTT TGCAAAAGGA GTTGGACTAC 
    CTTGTTGGTG CGGTTTCAAA CCCAAAGAGA CCATTTGCTG CCATTGTGGG 
    AGGTTCCAAG GTCTCATCTA AGATTGGAGT TATCGAATCG CTTCTTGAGA 
    AATGTGACAT CCTTCTGCTT GGTGGTGGAA TGATCTTTAC ATTCTACAAG 
    GCGCAAGGTC TTTCCGTTGG CTCCTCCCTT GTTGAAGAAG ACAAGCTTGA 
    ATTGGCTACA ACACTCCTTG CCAAGGCTAA GGCCAGAGGA GTCTCTCTGT 
    TGTTACCAAC AGATGTTGTG ATTGCTGACA AGTTCGCTCC TGATGCCAAC 
    AGCAAGATTG TGCCAGCATC AGCCATTCCT GATGGGTGGA TGGGATTGGA 
    CATCGGTCCA GACTCGGTGA AAACATTCAA CGAAGCTCTG GATACCACGC 
    AGACAGTCAT TTGGAATGGA CCAATGGGAG TTTTCGAGTT TGAAAAGTTT 
    GCAAAAGGAA CTGAGGCGGT AGCGAATAAA CTAGCAGAGC TAAGCAAAAA 
    GGGAGTGACA ACGATAATAG GAGGAGGAGA CTCGGTGGCA GCAGTGGAGA 
    AAGTGGGAGT AGCAGGAGTC ATGAGTCACA TCTCCACAGG TGGTGGTGCC 
    AGTTTGGAGC TCTTGGAAGG CAAAGTGCTT CCCGGTGTCG TCGCTCTTGA 
    TGAAGCAACG CCAGTCACTG TTTAACAACA TCTCTTTATT ACACCTGAAG 
    GGACCCCCCT AAATGAGTTT CTTCTTCTTA TTCTGTTGTA AATCAAAGTC 
    TTTGTTGTAC CATCAAATCC ATAGAGAGGA GGGACTCTTT TTGTCTCAAA 
    TAAAATCAAA TACAGTGACA TTCGCTAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G56190.1 [+] show detail - Phosphoglycerate kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Phosphoglycerate kinase 2.7e-162
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    FPrintScan Phosphoglycerate kinase 2.6e-100
    HMMPanther Phosphoglycerate kinase 3.5e-265
    Gene3D Phosphoglycerate kinase, N-terminal 1.5e-65
    Gene3D Phosphoglycerate kinase, C-terminal 2.3e-80
    PatternScan Phosphoglycerate kinase, conserved site 0
    HAMAP Phosphoglycerate kinase 42.104
    HMMPfam Phosphoglycerate kinase 9.3e-161

    See the detailed result >

    AT1G56190.1

    Model type
    Protein coding
    Short Description
    Phosphoglycerate kinase family protein
    Computational Description
    Phosphoglycerate kinase family protein; FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: phosphoglycerate kinase 1 (TAIR:AT3G12780.1); Has 10902 Blast hits to 10876 proteins in 3041 species: Archae - 254; Bacteria - 5279; Metazoa - 453; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4208 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR