F22544

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22544

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22544

Determination of introduced cDNA(s)

  • RAFL09-17-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-17-C05 - Resource: pda09662

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-17-C05 - full reading 
    GCAGACGCAG CCATGGGTAT CGATCTTATC GCAGGAGGTA AGAGTAAGAA 
    GACCAAAAGG ACTGCTCCTA AGTCCGATGA TGTCTACCTA AAGCTTCTCG 
    TCAAGCTTTA CCGGTTTTTG GTGAGGAGAT CTAACAGCAA CTTCAATGCT 
    GTGATTCTGA AAAGGCTTTT CATGAGCAAA GTCAACAAAG CTCCTCTTTC 
    ACTCTCTAGG CTTGTAGAGT TCATGACTGG CAAGGATGAC AAGATTGCTG 
    TGTTGGTTGG AACTATCACT GATGATTTGA GAGTTCATGA GATTCCTGCC 
    ATGAAGGTTA CTGCCTTGAG GTTTACTGAG AGGGCTAGGG CTAGAATTGA 
    GAAAGCTGGT GGAGAGTGCT TAACCTTTGA CCAGCTTGCT CTCAGAGCTC 
    CATTGGGACA GAACACAGTT CTTCTTAGAG GACCAAAGAA CTCGCGTGAA 
    GCAGTGAAGC ATTTCGGACC TGCTCCTGGT GTGCCACACA GTAACACTAA 
    GCCATATGTT AGGCATAAGG GAAGGAAGTT TGAGAAAGCT AGAGGAAAGC 
    GAAAGAGTCG TGGATTCAAG GTCTAAGAAG ATGTTTTCTG GTTTCGTTTT 
    GCTTGGTTTA AGTATCGAAG TTTTGGTAGG GAACGCTGGT TCCTCTTTAC 
    CCTGTTCCAG ACTTTGTTTT AAGTTCTGTT TTTCTATTCT CAAGACAATT 
    GGATATTTTG CTTTGTCTTT TAATCTTACT ACTATTAGCT GCAATGAGAT 
    TTTATCTAGA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT5G27850.1 [+] show detail - Ribosomal protein L18e/L15 superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.6e-25
    superfamily Ribosomal protein L18e/L15 1.9e-29
    HMMPanther Ribosomal protein L18e 4.8e-124
    HMMPfam Ribosomal protein L18e/L15 5.1e-24

    See the detailed result >

    AT5G27850.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L18e/L15 superfamily protein
    Computational Description
    Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039), Ribosomal protein L18e/L15 (InterPro:IPR021131); BEST Arabidopsis thaliana protein match is: ribosomal protein L18 (TAIR:AT3G05590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR