F22607

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22607

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22607

Determination of introduced cDNA(s)

  • RAFL02-10-L11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-10-L11 - Resource: pda00168

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-10-L11 - full reading
    ACCAAACAGC AAAACAAGAA GAACAACAAC ACTAAGCAAA AAAGAAAAGC 
    TCAAGCCGAG AGAGACAATG GCATCAACAT TCACGAGCTC AAGCAGTGTT
    CTTACCCCAA CAACATTCCT TGGCCAGACT AAAGCCTCAA GCTTTAACCC
    CCTTCGTGAT GTTGTCTCTC TCGGATCTCC CAAGTACACT ATGGGAAATG
    ATCTTTGGTA TGGACCTGAC AGAGTGAAGT ACTTAGGACC CTTTTCCGTT
    CAAACTCCGT CTTACCTCAC CGGAGAATTC CCTGGCGATT ATGGTTGGGA
    CACCGCCGGT TTATCCGCAG ACCCTGAAGC CTTTGCCAAA AACAGAGCTC
    TTGAGGTGAT CCATGGGAGA TGGGCAATGT TGGGAGCTTT TGGTTGCATA
    ACCCCTGAAG TTCTTCAAAA GTGGGTCCGT GTGGACTTCA AAGAACCAGT
    CTGGTTCAAA GCCGGTTCAC AAATCTTCTC CGAAGGCGGT TTGGACTACT
    TAGGCAACCC AAACCTAGTC CATGCTCAGA GCATTTTAGC CGTCCTTGGC
    TTCCAAGTCA TCCTCATGGG TTTGGTTGAA GGTTTCCGCA TCAACGGTCT
    TGATGGTGTT GGCGAAGGCA ACGACTTGTA CCCCGGTGGG CAATACTTTG
    ACCCGTTGGG TCTCGCTGAT GATCCAGTTA CTTTTGCTGA GCTTAAGGTG
    AAAGAGATCA AGAACGGAAG ATTGGCTATG TTCTCTATGT TTGGCTTCTT
    TGTTCAAGCC ATTGTTACTG GAAAAGGTCC TTTGGAGAAT CTCCTTGACC
    ATCTTGACAA CCCTGTTGCT AACAATGCGT GGGCTTTCGC AACTAAGTTT
    GCACCTGGAG CTTAAATTTT CAAGTCTTGA TGTGATTCTT GTAATGATAT
    GAACATAACC TTTCTTGTTC CTCTCAAATT ACAAATCTTC TATTTGCTAT
    GC

    Gene models with high sequence identity

    1. AT5G54270.1 [+] show detail - light-harvesting chlorophyll B-binding protein 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Chlorophyll A-B binding protein 2.4e-159
    superfamily Chlorophyll a-b binding protein 8.4e-77
    HMMPfam Chloroa_b-bind 3.9e-49

    See the detailed result >

    AT5G54270.1

    Model type
    Protein coding
    Short Description
    light-harvesting chlorophyll B-binding protein 3
    Curator Summary
    Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).
    Computational Description
    light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR