F22745

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22745

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22745

Determination of introduced cDNA(s)

  • RAFL04-17-L19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-L19 - Resource: pda12207

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-L19 - full reading 
    TGAAACCGGT GTTTGTATAT AAATCTGATT GATATAGAAA TCGAAACTCA 
    AATTGGAGAA CATTCGAGAA GCTTTGGATT TTTGAATCAC GAAGACATGG 
    AAAAAACAGA ATCTGTATCA GGAAAGGGGA AGAGAGTGAT TGTTATCGGC 
    GGCGGAATCG CCGGCTCTCT CGCTTCGAAA TTTCTTCAAT TCGATTCCGA 
    TCTCACCCTC ATTGATCCGA AGGAGTATTT TGAGATTATT TGGGCAAGTT 
    TAAGGTCAAT GGTAGAGCCA GCTTTTGCTG AAAGATCGGT GATAAACCAC 
    AAGAAGTATT TACAAAATGG TCGTGTTGTG ACTTCTCCAG CGGTTAATAT 
    CACAGACACC GATGTTTTGA CCGCGGATGG TCTTGTCTTT GGGTATGATT 
    ATCTTGTTAT TGCTACTGGT CACAATGATG TGCTTCCTAA AACTAGGCAA 
    GAGAAGTTAT CTCAATACCA AACAGAACAT GAGAAGATCA AGTCATCTGA 
    GTCGATTCTG ATTGTTGGTG GAGGTCCGTC GGGTGTGGAG CTCGCTGCGG 
    AGATAGCTGT CGATTTCCCT GAGAAAAAGG TTACTATAGT ACACAATGGA 
    CCGAGATTGC TGGAATTTGT TGGTCAGAAA GCTGCAGACA AGGCATTAGA 
    CTGGATGAAG TCCAAGAGAG TTGAAGTGAT ATTGAACCAA AGGGTTGATT 
    TGAGTTCAGC TTCAGATGGG AGTAAAACGT ACCGAACATC GGGTGGAGAG 
    ACGATACACG CGGATTGTCA CTTCCTCTGT ACTGGAAAAC CTTTGTCTTC 
    AGAATGGCTA AAAGGAACTG TTCTGAAAGA TAACTTGGAT GGCAAAGGAA 
    GGCTTATGGT CGATGAGTAC TTGAGAGTTA AGGGTCGCAA GAATGTATTC 
    GCTATTGGTG ATATTACTGA TGTCCCGGAG ATGAAACAAG GCTACATTGC 
    TGAGAAACAC GCCTCTGTAG CTACAAAGAA CATAAAGTTG TTGATGTCTG 
    GTGGGAACGA GAAGAAGATG TCGACTTACA AGCCTGGTCC GGACATTGCC 
    ATAATATCTT TAGGAAGAAA GGACTCGGTT GCTCAGTTCC CATTCATGAC 
    AGTCTCGGGT TGCATACCTG GTTTGATCAA ATCTAAGGAT CTGTTTGTCG 
    GGAAGACGAG GAAGGCAAGA GGTCTGGATC CTAACCTTGT GGAGCCTTGA 
    GTGATTGTGC TTATCTTCAT GATGAGATTC TTCTTGTGCA GGCGCATTTC 
    GTCGTTTATT TCATCACACG TTTGTTGTAT GTTGATTTGG TCCACTCTCC 
    TGTTTGTGGA TTCTCAGAGT GGAGTGTTGT TTGCTTTTGT TGTAACATGA 
    TTTGTAAAGA ATCTGTTCGA TTTCTCTAAA AGGAACCAAA GTTGTTCAAT 
    AAGCCATAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT3G44190.1 [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther APOPTOSIS-INDUCING FACTOR (AIF)-LIKE MITCHOND 3.5e-136
    HMMPanther NADH DEHYDROGENASE-RELATED 3.5e-136
    HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3e-20
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 5.2e-11
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.6e-09
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.6e-09
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.6e-09
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.6e-09
    FPrintScan Pyridine nucleotide-disulphide oxidoreductase, class-II 3.4e-05
    FPrintScan Pyridine nucleotide-disulphide oxidoreductase, class-II 3.4e-05
    FPrintScan Pyridine nucleotide-disulphide oxidoreductase, class-II 3.4e-05
    Gene3D no description 3.5e-09
    Gene3D no description 1.9e-20
    superfamily FAD/NAD(P)-binding domain 1.6e-30

    See the detailed result >

    AT3G44190.1

    Model type
    Protein coding
    Short Description
    FAD/NAD(P)-binding oxidoreductase family protein
    Computational Description
    FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G22140.1); Has 14374 Blast hits to 14371 proteins in 2395 species: Archae - 444; Bacteria - 11667; Metazoa - 157; Fungi - 716; Plants - 246; Viruses - 0; Other Eukaryotes - 1144 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR