F22747

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22747

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22747

Determination of introduced cDNA(s)

  • RAFL05-12-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-L08 - Resource: pda09324

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-L08 - full reading 
    TGGGATCTCA AAACCCTAAT ATCTGAACTT CGCCGTCGAG AGCATCCATG 
    GGTCGTGTCA TCAGAGCTCA ACGTAAGGGT GCGGGTTCCG TCTTCAAATC 
    CCACACTCAC CACCGCAAAG GTCCGGCTAA GTTCCGTAGC CTCGATTTCG 
    GCGAGAGAAA TGGTTACCTC AAGGGCGTCG TGACGGAGAT CATCCACGAT 
    CCTGGTCGTG GTGCTCCTCT TGCTCGTGTC ACTTTCCGTC ATCCTTTCCG 
    TTTCAAGAAA CAAAAGGAGC TCTTCGTCGC CGCCGAAGGT ATGTACACCG 
    GTCAGTTCTT GTACTGCGGT AAGAAAGCTA CTCTCGTCGT TGGAAATGTT 
    CTCCCTCTTA GATCTATTCC TGAAGGAGCT GTTGTCTGCA ACGTCGAGCA 
    TCACGTCGGT GATCGTGGTG TCCTCGCTAG AGCTTCTGGT GATTACGCCA 
    TTGTTATCGC TCACAACCCT GACAGCGACA CTACTAGGAT TAAGTTGCCA 
    TCGGGTTCGA AGAAGATTGT CCCAAGTGGA TGCAGGGCTA TGATTGGACA 
    AGTTGCTGGA GGTGGAAGAA CTGAGAAGCC GATGCTCAAG GCAGGAAACG 
    CGTACCACAA GTACCGTGTG AAGAGGAACT CATGGCCTAA GGTTCGTGGT 
    GTGGCTATGA ATCCAGTGGA GCATCCTCAT GGAGGAGGTA ACCATCAGCA 
    CATTGGTCAC GCCAGTACTG TTAGGCGTGA TGCACCTCCT GGACAGAAGG 
    TTGGTCTTAT TGCTGCAAGG AGGACTGGTC GTCTCAGAGG TCAAGCTGCT 
    GCTTCAGCTG CCAAGGCAGA CTAGAGTTAA AAGAGATAAA CTTTGTTTCT 
    CTTGTTTTCT ATGTTTCAAG TTTTGTTGTC TGTGTTTCCT TTTGAACCTC 
    ATTCTGAAAT CCTAAAAGAT TTTTATGATA AACCTTTCTC TCTT

    Gene models with high sequence identity

    1. AT2G18020.1 [+] show detail - Ribosomal protein L2 family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S RIBOSOMAL PROTEIN L8 6.3e-137
    HMMPanther Ribosomal protein L2 6.3e-137
    HMMPIR Ribosomal protein L2 3.1e-107
    Gene3D Nucleic acid-binding, OB-fold 1.1e-16
    Gene3D Ribosomal protein L2, domain 3 4e-34
    HMMPfam Ribosomal protein L2 1.5e-41
    HMMPfam Ribosomal protein L2 1.3e-16
    PatternScan Ribosomal protein L2 0
    superfamily Translation protein SH3-like 3.9e-54
    superfamily Nucleic acid-binding, OB-fold-like 2.8e-22

    See the detailed result >

    AT2G18020.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L2 family
    Computational Description
    embryo defective 2296 (EMB2296); FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, guard cell, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT4G36130.1); Has 10660 Blast hits to 10653 proteins in 3642 species: Archae - 317; Bacteria - 5675; Metazoa - 457; Fungi - 292; Plants - 1219; Viruses - 0; Other Eukaryotes - 2700 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR