F22750

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22750

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22750

Determination of introduced cDNA(s)

  • RAFL05-13-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-P19 - Resource: pda01273

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-P19 - full reading
    ACAAACAAAC CAAACAAAAA AAAAGAAGAA GAAAGACTAT GGAGATTCCG 
    CCGTCACAAT CTCCGGCGAC TCAACTCCGC CGTACAAAAT CCATATCCAA
    CATGACGACT CTAACTCCTC CAGAAGTTCC TTTCGACATA GCTTCAACGC
    CGCCGTCTTC GTTCGATTAC GAGCTCATCT CCGTAAAACC ATCCTCTTTC
    GTAGCTTACA CTTCTCTCAG AGATATCATC TCTTCTCCGA TTAACTCTTC
    ACTCAATTTA CCGTCGATCA ACGGTAGCTG CTCTCCTGTT ATATCCACCG
    CCGCCGGAGA TATCTCGATT CGTAACCGTC TCGTTAAGCA AGCTGCTTTG
    TCTTATCTTC AACCAACGGT GCTTACTTCG TCAGATGATT CTGCTGGTTC
    TCAATTCTTC CGCCGCGTTT GGCTTCACTT ATCCGCCGGG TTTCAGTTCT
    TGCGACGTGT GTTTGATTGG ATTTTTCAAT CGTTTCGTGT TCCTTTGATT
    GTCAAATAAA CTTTGATTTG ACAAAGGAAG TGATGGATTT GGTGAGAGTG
    CTCTGATGCA GTAAAGCTTG AGGATGTATA TGTTTGTTTT GAATACCTTA
    TAGATGGTGA ATTGTTGTTG CAATTGCTTG AAGATTTGGA GGCTCCAGTG
    GAAGATACAT TGCAGTAGTT GAGCAATTAC TAAATGTCCT CTTATCTTTA
    AGACAGAGAT TCCTTGATCG ATGTCAGATT CATGTTTTGA CATGTATGGA
    CATAGTAGCT TCTCGTAGAC ATAGCTAAGT CCCTGTTAGA AACCAAGAGA
    AGAAGATTGG TCGTTTTGTG AATCTAAGAA TGAGAATGAA TTCTCATTAG
    ATTTTTATTG CATTGTACTG TAGTTAGTAC CTGTGATTTC GGGTAACATA
    AGTAGATGAG AAGAGCGATT TTGATCTCTC CGTAGAGTGG TAACCTGCGG
    ATAGATGAGA TGAATCAGAA GGTTTCATAC A

    Gene models with high sequence identity

    1. AT5G06280.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther HVA22-LIKE PROTEIN 1e-06
    HMMPanther TB2/DP1/HVA22 related protein 1e-06

    See the detailed result >

    AT5G06280.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR